Difference between revisions of "TSS:Hg 219881.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000560485 | + | |all_trans=NM_001242333:81 ENST00000560485.1:83 ENST00000541397.2:86 AK297175:86 BC103936:-157 BC103937:-157 BC103938:-157 AL136570:-191 LF211803:-251 MA447380:-251 ENST00000394319.8:-331 AK299709:-331 ENST00000340587.7:-427 NM_014368:-443 NM_199160:-443 LF205667:-459 MA441244:-459 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=81 |
| − | |distance_to_tss=- | + | |distance_to_tss=-81 |
|end=122228514 | |end=122228514 | ||
| + | |end_of_center_position=122228514 | ||
|entrez_id=26468 | |entrez_id=26468 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=122228513 | |start=122228513 | ||
| + | |start_of_center_position=122228513 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001242333.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_219881.1 | |tss_id=hg_219881.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9UPM6 |
}} | }} | ||
Latest revision as of 07:23, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 122228513 |
|---|---|
| End of the center position in the TSS region: | 122228514 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001242333.2 |
|---|---|
| Distance: | 81 |
| Num_trans: | 17 |
| All_trans: | NM_001242333:81 ENST00000560485.1:83 ENST00000541397.2:86 AK297175:86 BC103936:-157 BC103937:-157 BC103938:-157 AL136570:-191 LF211803:-251 MA447380:-251 ENST00000394319.8:-331 AK299709:-331 ENST00000340587.7:-427 NM_014368:-443 NM_199160:-443 LF205667:-459 MA441244:-459 |
TATA-Box annotation
| Distance to TSS: | -81 |
|---|---|
| Nearest PromoterID: | NM_001242333 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
