Difference between revisions of "TSS:Hg 219953.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:16391 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance=-48 | |distance=-48 | ||
| − | |distance_to_tss= | + | |distance_to_tss=1638 |
|end=136372031 | |end=136372031 | ||
|end_of_center_position=136372031 | |end_of_center_position=136372031 | ||
|entrez_id=64170 | |entrez_id=64170 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=CANDF2 | + | |gene_alias=CANDF2{{!}}hCARD9 |
|gene_description=caspase recruitment domain family member 9 | |gene_description=caspase recruitment domain family member 9 | ||
|gene_id=64170 | |gene_id=64170 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:16391 | |hgnc_mgi_id=HGNC:16391 | ||
|nearest_ensembl=ENSG00000187796 | |nearest_ensembl=ENSG00000187796 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_052814 |
|nearest_refseq=NM_052813 | |nearest_refseq=NM_052813 | ||
|nearest_unigene=Hs.694071 | |nearest_unigene=Hs.694071 | ||
| − | |num_trans= | + | |num_trans=64170 |
|species=human | |species=human | ||
|start=136372030 | |start=136372030 | ||
|start_of_center_position=136372030 | |start_of_center_position=136372030 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=CU679165 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_219953.1 | |tss_id=hg_219953.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 07:23, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 136372030 |
|---|---|
| End of the center position in the TSS region: | 136372031 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | CU679165 |
|---|---|
| Distance: | -48 |
| Num_trans: | 64170 |
| All_trans: | HGNC:16391 |
TATA-Box annotation
| Distance to TSS: | 1638 |
|---|---|
| Nearest PromoterID: | NM_052814 |
| Entrez ID: | 64170 |
| Nearest Unigene: | Hs.694071 |
| Nearest Refseq: | NM_052813 |
| Nearest Ensembl: | ENSG00000187796 |
| Gene Name: | caspase recruitment domain family member 9 |
| Gene Alias: | CANDF2|hCARD9 |
| Gene Description: | caspase recruitment domain family member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
