Difference between revisions of "TSS:Hg 220156.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000286067.3:-45 NM_015652:-45 uc001kmv.4:-45 BC024315:-45 CU692918:62 KJ893531:62 AK126886:-98 |chr=chr10 |cpg_percent=0.005 |distance=-45 |distan...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:29503 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-121427 | |distance_to_tss=-121427 | ||
|end=96981329 | |end=96981329 | ||
| + | |end_of_center_position=96981329 | ||
|entrez_id=100505540 | |entrez_id=100505540 | ||
|gc_percent=0.41791 | |gc_percent=0.41791 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SLIT1 antisense RNA 1 | |gene_description=SLIT1 antisense RNA 1 | ||
| − | |gene_id= | + | |gene_id=84458 |
| − | |gene_name= | + | |gene_name=ligand dependent nuclear receptor corepressor |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29503 |
| − | |gene_symbol= | + | |gene_symbol=LCOR |
| − | |gene_synonyms=DKFZP564P1916 FLJ13022 | + | |gene_synonyms=DKFZP564P1916 FLJ13022 FLJ38026 KIAA1795 MLR2 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29503 |
|nearest_ensembl=ENSG00000234855 | |nearest_ensembl=ENSG00000234855 | ||
|nearest_promoter_id=NR_038330 | |nearest_promoter_id=NR_038330 | ||
|nearest_refseq=NR_038330 | |nearest_refseq=NR_038330 | ||
|nearest_unigene=Hs.568878 | |nearest_unigene=Hs.568878 | ||
| − | |num_trans= | + | |num_trans=84458 |
|species=human | |species=human | ||
|start=96981328 | |start=96981328 | ||
| + | |start_of_center_position=96981328 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC024315 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_220156.1 | |tss_id=hg_220156.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 07:26, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 96981328 |
|---|---|
| End of the center position in the TSS region: | 96981329 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC024315 |
|---|---|
| Distance: | -45 |
| Num_trans: | 84458 |
| All_trans: | HGNC:29503 |
TATA-Box annotation
| Distance to TSS: | -121427 |
|---|---|
| Nearest PromoterID: | NR_038330 |
| Entrez ID: | 100505540 |
| Nearest Unigene: | Hs.568878 |
| Nearest Refseq: | NR_038330 |
| Nearest Ensembl: | ENSG00000234855 |
| Gene Name: | ligand dependent nuclear receptor corepressor |
| Gene Alias: | - |
| Gene Description: | SLIT1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
