Difference between revisions of "TSS:Hg 221754.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000570083.5:50 NM_001126102:50 NM_001318138:50 NM_005143:50 uc010cgm.4:50 ENST00000355906.9:53 uc002fbr.5:53 ENST00000228226.12:67 ENST00000398131...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |HP2ALPHA2= |
| + | |HPA1S= | ||
| + | |all_trans=HGNC:5141 | ||
|chr=chr16 | |chr=chr16 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=-37 |
| − | |distance_to_tss= | + | |distance_to_tss=37 |
|end=72054542 | |end=72054542 | ||
| + | |end_of_center_position=72054542 | ||
|entrez_id=3240 | |entrez_id=3240 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=BP | + | |gene_alias=BP{{!}}HP2ALPHA2{{!}}HPA1S |
|gene_description=haptoglobin | |gene_description=haptoglobin | ||
|gene_id=3240 | |gene_id=3240 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:5141 | |hgnc_mgi_id=HGNC:5141 | ||
|nearest_ensembl=ENSG00000257017 | |nearest_ensembl=ENSG00000257017 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005143 |
|nearest_refseq=NM_005143 | |nearest_refseq=NM_005143 | ||
|nearest_unigene=Hs.513711 | |nearest_unigene=Hs.513711 | ||
| − | |num_trans= | + | |num_trans=3240 |
|species=human | |species=human | ||
|start=72054541 | |start=72054541 | ||
| + | |start_of_center_position=72054541 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000355906.10 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_221754.1 | |tss_id=hg_221754.1 | ||
Latest revision as of 07:43, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72054541 |
|---|---|
| End of the center position in the TSS region: | 72054542 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000355906.10 |
|---|---|
| Distance: | -37 |
| Num_trans: | 3240 |
| All_trans: | HGNC:5141 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_005143 |
| Entrez ID: | 3240 |
| Nearest Unigene: | Hs.513711 |
| Nearest Refseq: | NM_005143 |
| Nearest Ensembl: | ENSG00000257017 |
| Gene Name: | haptoglobin |
| Gene Alias: | BP|HP2ALPHA2|HPA1S |
| Gene Description: | haptoglobin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 49(CAGCATAAAAAG,-,0.00),51(GCATAAAAAGAC,+,0.00) |
