Difference between revisions of "TSS:Hg 232223.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr10 |cpg_percent=0.035 |distance= |distance_to_tss=33666 |end=248422 |entrez_id=102465753 |gc_percent=0.487562 |gene_alias=B-ATF|hsa-mir-7641-2 |gene_descri...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:11320 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=-3 |
| − | |distance_to_tss= | + | |distance_to_tss=68426 |
| − | |end= | + | |end=26861084 |
| − | |entrez_id= | + | |end_of_center_position=26861082 |
| + | |entrez_id=10771 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias= | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
| − | | | + | |gene_description=zinc finger MYND-type containing 11 |
| − | |gene_name= | + | |gene_id=10006 |
| − | |gene_type= | + | |gene_name=abl interactor 1 |
| − | |nearest_ensembl= | + | |gene_source=HGNC:11320 |
| − | |nearest_promoter_id= | + | |gene_symbol=ABI1 |
| − | |nearest_refseq= | + | |gene_synonyms=ABI-1 E3B1 |
| − | |nearest_unigene= | + | |gene_type=protein-coding |
| − | |num_trans= | + | |hgnc_mgi_id=HGNC:11320 |
| + | |hsa-mir-7641-2= | ||
| + | |nearest_ensembl=ENSG00000015171 | ||
| + | |nearest_promoter_id=NM_001202467 | ||
| + | |nearest_refseq=NM_006624 | ||
| + | |nearest_unigene=Hs.292265 | ||
| + | |num_trans=10006 | ||
|species=human | |species=human | ||
| − | |start= | + | |start=26861079 |
| + | |start_of_center_position=26861081 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=81(GTTCCTAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232223.1 | |tss_id=hg_232223.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=B6VEX3 B6VEX4 Q8IZP0 | ||
}} | }} | ||
Latest revision as of 11:06, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 26861081 |
|---|---|
| End of the center position in the TSS region: | 26861082 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000536334.5 ENST00000490841.6 ENST00000376137.8 |
|---|---|
| Distance: | -3 |
| Num_trans: | 10006 |
| All_trans: | HGNC:11320 |
TATA-Box annotation
| Distance to TSS: | 68426 |
|---|---|
| Nearest PromoterID: | NM_001202467 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | abl interactor 1 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 81(GTTCCTAAAAGG,-,0.00) |
