Difference between revisions of "TSS:Hg 232266.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:23505 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=317 |
|distance_to_tss=-21 | |distance_to_tss=-21 | ||
| − | |end= | + | |end=42782478 |
| + | |end_of_center_position=42782478 | ||
|entrez_id=100288485 | |entrez_id=100288485 | ||
|gc_percent=0.318408 | |gc_percent=0.318408 | ||
|gene_alias=HN7 | |gene_alias=HN7 | ||
| − | |gene_description=MT-RNR2 | + | |gene_description=MT-RNR2 like 7 |
| − | |gene_id= | + | |gene_id=9790 |
| − | |gene_name= | + | |gene_name=BMS1 ribosome biogenesis factor |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:23505 |
| − | |gene_symbol= | + | |gene_symbol=BMS1 |
| − | |gene_synonyms= | + | |gene_synonyms=KIAA0187 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:23505 |
|nearest_ensembl=ENSG00000256892 | |nearest_ensembl=ENSG00000256892 | ||
|nearest_promoter_id=NM_001190489 | |nearest_promoter_id=NM_001190489 | ||
|nearest_refseq=NM_001190489 | |nearest_refseq=NM_001190489 | ||
|nearest_unigene=Hs.727092 | |nearest_unigene=Hs.727092 | ||
| − | |num_trans= | + | |num_trans=9790 |
|species=human | |species=human | ||
| − | |start= | + | |start=42782477 |
| − | |strand= | + | |start_of_center_position=42782477 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=9(CCTTAAATAAAG,+,0.00) |
| − | |tss_classification= | + | |transcript_name=ENST00000374518.6 |
| + | |tss_classification=yes | ||
|tss_id=hg_232266.1 | |tss_id=hg_232266.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q14692 |
}} | }} | ||
Latest revision as of 11:07, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42782477 |
|---|---|
| End of the center position in the TSS region: | 42782478 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374518.6 |
|---|---|
| Distance: | 317 |
| Num_trans: | 9790 |
| All_trans: | HGNC:23505 |
TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NM_001190489 |
| Entrez ID: | 100288485 |
| Nearest Unigene: | Hs.727092 |
| Nearest Refseq: | NM_001190489 |
| Nearest Ensembl: | ENSG00000256892 |
| Gene Name: | BMS1 ribosome biogenesis factor |
| Gene Alias: | HN7 |
| Gene Description: | MT-RNR2 like 7 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.318408 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 9(CCTTAAATAAAG,+,0.00) |
