Difference between revisions of "TSS:Hg 232306.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:1912 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=51 |
| − | |distance_to_tss= | + | |distance_to_tss=281 |
| − | |end= | + | |end=49609044 |
|end_of_center_position=49609044 | |end_of_center_position=49609044 | ||
|entrez_id=57705 | |entrez_id=57705 | ||
| Line 11: | Line 11: | ||
|gene_alias=C10orf64 | |gene_alias=C10orf64 | ||
|gene_description=WDFY family member 4 | |gene_description=WDFY family member 4 | ||
| − | |gene_id= | + | |gene_id=1103 |
| − | |gene_name= | + | |gene_name=choline O-acetyltransferase |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1912 |
| − | |gene_symbol= | + | |gene_symbol=CHAT |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1912 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000128815 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370153 |
|nearest_refseq=NM_020945 | |nearest_refseq=NM_020945 | ||
|nearest_unigene=Hs.287379 | |nearest_unigene=Hs.287379 | ||
| − | |num_trans= | + | |num_trans=1103 |
|species=human | |species=human | ||
| − | |start= | + | |start=49609043 |
|start_of_center_position=49609043 | |start_of_center_position=49609043 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000339797.5 D82342 AF305909 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232306.1 | |tss_id=hg_232306.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P28329 |
}} | }} | ||
Latest revision as of 11:07, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 49609043 |
|---|---|
| End of the center position in the TSS region: | 49609044 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000339797.5 D82342 AF305909 |
|---|---|
| Distance: | 51 |
| Num_trans: | 1103 |
| All_trans: | HGNC:1912 |
TATA-Box annotation
| Distance to TSS: | 281 |
|---|---|
| Nearest PromoterID: | NM_001370153 |
| Entrez ID: | 57705 |
| Nearest Unigene: | Hs.287379 |
| Nearest Refseq: | NM_020945 |
| Nearest Ensembl: | ENSG00000128815 |
| Gene Name: | choline O-acetyltransferase |
| Gene Alias: | C10orf64 |
| Gene Description: | WDFY family member 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
