Difference between revisions of "TSS:Hg 232307.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000311787.5:-107 uc001jhj.4:-107 BC029839:-107 NM_001164484:-119 BC047597:-119 |chr=chr10 |cpg_percent=0.01 |distance=-107 |distance_to_tss=119 |e...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:10936 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=77 |
|distance_to_tss=119 | |distance_to_tss=119 | ||
| − | |end= | + | |end=49610224 |
| + | |end_of_center_position=49610224 | ||
|entrez_id=170370 | |entrez_id=170370 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
|gene_alias=C10orf73 | |gene_alias=C10orf73 | ||
|gene_description=family with sequence similarity 170 member B | |gene_description=family with sequence similarity 170 member B | ||
| − | |gene_id= | + | |gene_id=6572 |
| − | |gene_name=family | + | |gene_name=solute carrier family 18 member A3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10936 |
| − | |gene_symbol= | + | |gene_symbol=SLC18A3 |
| − | |gene_synonyms= | + | |gene_synonyms=VACHT |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10936 |
|nearest_ensembl=ENSG00000172538 | |nearest_ensembl=ENSG00000172538 | ||
|nearest_promoter_id=NM_001164484 | |nearest_promoter_id=NM_001164484 | ||
|nearest_refseq=NM_001164484 | |nearest_refseq=NM_001164484 | ||
|nearest_unigene=Hs.646291 | |nearest_unigene=Hs.646291 | ||
| − | |num_trans= | + | |num_trans=6572 |
|species=human | |species=human | ||
| − | |start= | + | |start=49610223 |
| − | |strand= | + | |start_of_center_position=49610223 |
| − | |transcript_name= | + | |strand=+ |
| − | |tss_classification= | + | |transcript_name=U09210 |
| + | |tss_classification=yes | ||
|tss_id=hg_232307.1 | |tss_id=hg_232307.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 11:07, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49610223 |
|---|---|
| End of the center position in the TSS region: | 49610224 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U09210 |
|---|---|
| Distance: | 77 |
| Num_trans: | 6572 |
| All_trans: | HGNC:10936 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_001164484 |
| Entrez ID: | 170370 |
| Nearest Unigene: | Hs.646291 |
| Nearest Refseq: | NM_001164484 |
| Nearest Ensembl: | ENSG00000172538 |
| Gene Name: | solute carrier family 18 member A3 |
| Gene Alias: | C10orf73 |
| Gene Description: | family with sequence similarity 170 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
