Difference between revisions of "TSS:Hg 232393.1"
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{{TSSDetail | {{TSSDetail | ||
|FMDSP= | |FMDSP= | ||
| − | |all_trans= | + | |all_trans=NM_005174:0 NM_001320886:0 LF383674:22 MA619251:22 ENST00000493053.5:39 BC000931:48 ENST00000462760.1:51 BC020824:60 ENST00000460362.5:67 ENST00000356708.12:69 ENST00000335698.4:69 NM_001001973:69 AK292896:69 AK296803:69 D16562:69 D16563:69 BC016812:70 AK129907:70 ENST00000465936.5:71 AK294061:71 BC010380:71 ENST00000460820.6:76 BC000470:81 BC013394:81 BC013865:83 CU677727:99 HQ448142:99 KJ890734:99 KJ896474:99 CR457403:100 ENST00000472202.1:102 BC026049:121 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=22 |
| − | |distance_to_tss= | + | |distance_to_tss=119 |
| − | |end= | + | |end=7788108 |
|end_of_center_position=7788105 | |end_of_center_position=7788105 | ||
|entrez_id=338599 | |entrez_id=338599 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=DUSP27 | + | |gene_alias=DUSP27{{!}}FMDSP |
|gene_description=dual specificity phosphatase and pro isomerase domain containing 1 | |gene_description=dual specificity phosphatase and pro isomerase domain containing 1 | ||
| − | |gene_id= | + | |gene_id=509 |
| − | |gene_name= | + | |gene_name=ATP synthase F1 subunit gamma |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:833 |
| − | |gene_symbol= | + | |gene_symbol=ATP5F1C |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:833 |
|nearest_ensembl=ENSG00000188716 | |nearest_ensembl=ENSG00000188716 | ||
|nearest_promoter_id=NM_001003892 | |nearest_promoter_id=NM_001003892 | ||
|nearest_refseq=NM_001003892 | |nearest_refseq=NM_001003892 | ||
|nearest_unigene=Hs.535090 | |nearest_unigene=Hs.535090 | ||
| − | |num_trans= | + | |num_trans=32 |
|species=human | |species=human | ||
| − | |start= | + | |start=7788101 |
|start_of_center_position=7788104 | |start_of_center_position=7788104 | ||
| − | |strand= | + | |strand=+ |
| − | |tata_box= | + | |tata_box=-59(GGCTCTAAAATG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF383674 MA619251 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232393.1 | |tss_id=hg_232393.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8TAS0 |
}} | }} | ||
Latest revision as of 11:09, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7788104 |
|---|---|
| End of the center position in the TSS region: | 7788105 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF383674 MA619251 |
|---|---|
| Distance: | 22 |
| Num_trans: | 32 |
| All_trans: | NM_005174:0 NM_001320886:0 LF383674:22 MA619251:22 ENST00000493053.5:39 BC000931:48 ENST00000462760.1:51 BC020824:60 ENST00000460362.5:67 ENST00000356708.12:69 ENST00000335698.4:69 NM_001001973:69 AK292896:69 AK296803:69 D16562:69 D16563:69 BC016812:70 AK129907:70 ENST00000465936.5:71 AK294061:71 BC010380:71 ENST00000460820.6:76 BC000470:81 BC013394:81 BC013865:83 CU677727:99 HQ448142:99 KJ890734:99 KJ896474:99 CR457403:100 ENST00000472202.1:102 BC026049:121 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NM_001003892 |
| Entrez ID: | 338599 |
| Nearest Unigene: | Hs.535090 |
| Nearest Refseq: | NM_001003892 |
| Nearest Ensembl: | ENSG00000188716 |
| Gene Name: | ATP synthase F1 subunit gamma |
| Gene Alias: | DUSP27|FMDSP |
| Gene Description: | dual specificity phosphatase and pro isomerase domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -59(GGCTCTAAAATG,-,0.00) |
