Difference between revisions of "TSS:Hg 232760.1"
From referenceTSS
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|TIF1GAMMA= | |TIF1GAMMA= | ||
|TIFGAMMA= | |TIFGAMMA= | ||
| − | |all_trans= | + | |all_trans=HGNC:29905 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-3 | |distance=-3 | ||
|distance_to_tss=108339 | |distance_to_tss=108339 | ||
| − | |end= | + | |end=114758000 |
|end_of_center_position=114758000 | |end_of_center_position=114758000 | ||
|entrez_id=51592 | |entrez_id=51592 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_015906 | |nearest_refseq=NM_015906 | ||
|nearest_unigene=Hs.26837 | |nearest_unigene=Hs.26837 | ||
| − | |num_trans= | + | |num_trans=7812 |
|species=human | |species=human | ||
| − | |start= | + | |start=114757999 |
|start_of_center_position=114757999 | |start_of_center_position=114757999 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000369530.5 | |transcript_name=ENST00000369530.5 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_232760.1 | |tss_id=hg_232760.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=O75534 | |uniprot_id=O75534 | ||
}} | }} | ||
Latest revision as of 11:17, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 114757999 |
|---|---|
| End of the center position in the TSS region: | 114758000 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000369530.5 |
|---|---|
| Distance: | -3 |
| Num_trans: | 7812 |
| All_trans: | HGNC:29905 |
TATA-Box annotation
| Distance to TSS: | 108339 |
|---|---|
| Nearest PromoterID: | NM_033020 |
| Entrez ID: | 51592 |
| Nearest Unigene: | Hs.26837 |
| Nearest Refseq: | NM_015906 |
| Nearest Ensembl: | ENSG00000197323 |
| Gene Name: | cold shock domain containing E1 |
| Gene Alias: | ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA |
| Gene Description: | tripartite motif containing 33 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
