Difference between revisions of "TSS:Hg 23299.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |ITRAF= |
| + | |TRAF2= | ||
| + | |all_trans=HGNC:11562 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-33 | |distance_to_tss=-33 | ||
|end=161136942 | |end=161136942 | ||
| + | |end_of_center_position=161136922 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.41791 | |gc_percent=0.41791 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF{{!}}ITRAF{{!}}TRAF2 |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_004180 | |nearest_refseq=NM_004180 | ||
|nearest_unigene=Hs.132257 | |nearest_unigene=Hs.132257 | ||
| − | |num_trans= | + | |num_trans=10010 |
|species=human | |species=human | ||
|start=161136901 | |start=161136901 | ||
| + | |start_of_center_position=161136921 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000259075.6 ENST00000432002.5 | + | |transcript_name=ENST00000259075.6 ENST00000432002.5 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_23299.1 | |tss_id=hg_23299.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=E7EV32 Q92844 | |uniprot_id=E7EV32 Q92844 | ||
}} | }} | ||
Latest revision as of 11:22, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 161136921 |
|---|---|
| End of the center position in the TSS region: | 161136922 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000259075.6 ENST00000432002.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10010 |
| All_trans: | HGNC:11562 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_133484 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF|ITRAF|TRAF2 |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.41791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
