Difference between revisions of "TSS:Hg 233277.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:7708 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=82 | |distance=82 | ||
|distance_to_tss=1419 | |distance_to_tss=1419 | ||
| − | |end= | + | |end=161202065 |
|end_of_center_position=161202065 | |end_of_center_position=161202065 | ||
|entrez_id=102466751 | |entrez_id=102466751 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_106918 | |nearest_refseq=NR_106918 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=4720 |
|peakPage= | |peakPage= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=161202064 |
|start_of_center_position=161202064 | |start_of_center_position=161202064 | ||
| − | |strand= | + | |strand=+ |
|tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | ||
|transcript_name=ENST00000392179.5 | |transcript_name=ENST00000392179.5 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_233277.1 | |tss_id=hg_233277.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=O75306 | |uniprot_id=O75306 | ||
}} | }} | ||
Latest revision as of 11:28, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161202064 |
|---|---|
| End of the center position in the TSS region: | 161202065 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000392179.5 |
|---|---|
| Distance: | 82 |
| Num_trans: | 4720 |
| All_trans: | HGNC:7708 |
TATA-Box annotation
| Distance to TSS: | 1419 |
|---|---|
| Nearest PromoterID: | NR_106918 |
| Entrez ID: | 102466751 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106918 |
| Nearest Ensembl: | ENSG00000278267 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S2 |
| Gene Alias: | hsa-mir-6859-1 |
| Gene Description: | microRNA 6859-1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
