Difference between revisions of "TSS:Hg 233277.1"
From referenceTSS
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| − | {{ | + | {{TSSDetail |
| − | |all_trans= | + | |all_trans=HGNC:7708 |
| − | |chr= | + | |chr=chr1 |
| − | |cpg_percent= | + | |cpg_percent=0.02 |
| − | |distance= | + | |distance=82 |
| − | |distance_to_tss= | + | |distance_to_tss=1419 |
| − | |end= | + | |end=161202065 |
| − | |entrez_id= | + | |end_of_center_position=161202065 |
| − | |gc_percent= | + | |entrez_id=102466751 |
| − | |gene_alias= | + | |gc_percent=0.656716 |
| − | |gene_description= | + | |gene_alias=hsa-mir-6859-1 |
| − | |gene_id= | + | |gene_description=microRNA 6859-1 |
| − | |gene_name= | + | |gene_id=4720 |
| − | |gene_source= | + | |gene_name=NADH:ubiquinone oxidoreductase core subunit S2 |
| − | |gene_symbol= | + | |gene_source=HGNC:7708 |
| − | |gene_synonyms= | + | |gene_symbol=NDUFS2 |
| − | |gene_type= | + | |gene_synonyms=CI-49 |
| − | |hgnc_mgi_id= | + | |gene_type=ncRNA |
| − | |nearest_ensembl= | + | |hgnc_mgi_id=HGNC:7708 |
| − | |nearest_promoter_id= | + | |nearest_ensembl=ENSG00000278267 |
| − | |nearest_refseq= | + | |nearest_promoter_id=NR_106918 |
| + | |nearest_refseq=NR_106918 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=4720 |
| − | | | + | |peakPage= |
| − | | | + | |species=human |
| − | |start= | + | |start=161202064 |
| − | |strand= | + | |start_of_center_position=161202064 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
| − | |uniprot_id= | + | |transcript_name=ENST00000392179.5 |
| + | |tss_classification=yes | ||
| + | |tss_id=hg_233277.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O75306 | ||
}} | }} | ||
Latest revision as of 11:28, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 161202064 |
|---|---|
| End of the center position in the TSS region: | 161202065 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000392179.5 |
|---|---|
| Distance: | 82 |
| Num_trans: | 4720 |
| All_trans: | HGNC:7708 |
TATA-Box annotation
| Distance to TSS: | 1419 |
|---|---|
| Nearest PromoterID: | NR_106918 |
| Entrez ID: | 102466751 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106918 |
| Nearest Ensembl: | ENSG00000278267 |
| Gene Name: | NADH:ubiquinone oxidoreductase core subunit S2 |
| Gene Alias: | hsa-mir-6859-1 |
| Gene Description: | microRNA 6859-1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
