Difference between revisions of "TSS:Hg 233712.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:8621 |
| − | |chr= | + | |chr=chr1 |
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance=- | + | |distance=-147 |
|distance_to_tss=44038 | |distance_to_tss=44038 | ||
| − | |end= | + | |end=18631153 |
|end_of_center_position=18631153 | |end_of_center_position=18631153 | ||
|entrez_id=220382 | |entrez_id=220382 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=family with sequence similarity 181 member B | |gene_description=family with sequence similarity 181 member B | ||
| − | |gene_id= | + | |gene_id=5081 |
| − | |gene_name= | + | |gene_name=paired box 7 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:8621 |
| − | |gene_symbol= | + | |gene_symbol=PAX7 |
| − | |gene_synonyms= | + | |gene_synonyms=Hup1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:8621 |
|nearest_ensembl=ENSG00000182103 | |nearest_ensembl=ENSG00000182103 | ||
|nearest_promoter_id=NM_175885 | |nearest_promoter_id=NM_175885 | ||
|nearest_refseq=NM_175885 | |nearest_refseq=NM_175885 | ||
|nearest_unigene=Hs.448218 | |nearest_unigene=Hs.448218 | ||
| − | |num_trans= | + | |num_trans=5081 |
|species=human | |species=human | ||
| − | |start= | + | |start=18631152 |
|start_of_center_position=18631152 | |start_of_center_position=18631152 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000375375.7 X96743 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_233712.1 | |tss_id=hg_233712.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P23759 |
}} | }} | ||
Latest revision as of 11:38, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18631152 |
|---|---|
| End of the center position in the TSS region: | 18631153 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375375.7 X96743 |
|---|---|
| Distance: | -147 |
| Num_trans: | 5081 |
| All_trans: | HGNC:8621 |
TATA-Box annotation
| Distance to TSS: | 44038 |
|---|---|
| Nearest PromoterID: | NM_175885 |
| Entrez ID: | 220382 |
| Nearest Unigene: | Hs.448218 |
| Nearest Refseq: | NM_175885 |
| Nearest Ensembl: | ENSG00000182103 |
| Gene Name: | paired box 7 |
| Gene Alias: | - |
| Gene Description: | family with sequence similarity 181 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
