Difference between revisions of "TSS:Hg 233740.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |EXO4= |
| − | |chr= | + | |PPP1R151= |
| + | |SGA72M= | ||
| + | |SLP2= | ||
| + | |SLP2A= | ||
| + | |all_trans=NR_135115:135 NR_135114:135 AK096098:144 ENST00000437898.1:250 LF357177:287 MA592754:287 | ||
| + | |chr=chr1 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance= | + | |distance=135 |
|distance_to_tss=-7038 | |distance_to_tss=-7038 | ||
| − | |end= | + | |end=19210251 |
| + | |end_of_center_position=19210242 | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| − | |gene_alias=CHR11SYT | + | |gene_alias=CHR11SYT{{!}}EXO4{{!}}PPP1R151{{!}}SGA72M{{!}}SLP2{{!}}SLP2A |
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
| − | |gene_id= | + | |gene_id=101927895 |
| − | |gene_name= | + | |gene_name=EMC1 antisense RNA 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:54050 |
| − | |gene_symbol= | + | |gene_symbol=EMC1-AS1 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:54050 |
|nearest_ensembl=ENSG00000137501 | |nearest_ensembl=ENSG00000137501 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001162952 |
|nearest_refseq=NM_032379 | |nearest_refseq=NM_032379 | ||
|nearest_unigene=Hs.369520 | |nearest_unigene=Hs.369520 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
| − | |start= | + | |start=19210231 |
| − | |strand= | + | |start_of_center_position=19210241 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=-84(GTCCCTAAAAGA,-,0.00),71(CTTTTAATAGGC,+,0.00) |
| − | |tss_classification= | + | |transcript_name=NR_135115.1 NR_135114.1 |
| + | |tss_classification=yes | ||
|tss_id=hg_233740.1 | |tss_id=hg_233740.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:38, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19210241 |
|---|---|
| End of the center position in the TSS region: | 19210242 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_135115.1 NR_135114.1 |
|---|---|
| Distance: | 135 |
| Num_trans: | 6 |
| All_trans: | NR_135115:135 NR_135114:135 AK096098:144 ENST00000437898.1:250 LF357177:287 MA592754:287 |
TATA-Box annotation
| Distance to TSS: | -7038 |
|---|---|
| Nearest PromoterID: | NM_001162952 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | EMC1 antisense RNA 1 |
| Gene Alias: | CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -84(GTCCCTAAAAGA,-,0.00),71(CTTTTAATAGGC,+,0.00) |
