Difference between revisions of "TSS:Hg 236110.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:29105 |
| − | |chr= | + | |chr=chr1 |
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| − | |distance= | + | |distance=28 |
|distance_to_tss=1 | |distance_to_tss=1 | ||
| − | |end= | + | |end=6497124 |
| + | |end_of_center_position=6497124 | ||
|entrez_id=548593 | |entrez_id=548593 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=GIYD1 | |gene_alias=GIYD1 | ||
| − | |gene_description= | + | |gene_description=SLX1 homolog A, structure-specific endonuclease subunit |
| − | |gene_id= | + | |gene_id=57449 |
| − | |gene_name= | + | |gene_name=pleckstrin homology and RhoGEF domain containing G5 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:29105 |
| − | |gene_symbol= | + | |gene_symbol=PLEKHG5 |
| − | |gene_synonyms= | + | |gene_synonyms=GEF720 KIAA0720 Syx Tech |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:29105 |
|nearest_ensembl=ENSG00000132207 | |nearest_ensembl=ENSG00000132207 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001015000 |
|nearest_refseq=NM_001014999 | |nearest_refseq=NM_001014999 | ||
|nearest_unigene=Hs.729791 | |nearest_unigene=Hs.729791 | ||
| − | |num_trans= | + | |num_trans=57449 |
|species=human | |species=human | ||
| − | |start= | + | |start=6497123 |
| − | |strand= | + | |start_of_center_position=6497123 |
| − | |transcript_name= | + | |strand=- |
| + | |transcript_name=ENST00000537245.6 AK294875 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_236110.1 | |tss_id=hg_236110.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O94827 |
}} | }} | ||
Latest revision as of 12:30, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6497123 |
|---|---|
| End of the center position in the TSS region: | 6497124 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000537245.6 AK294875 |
|---|---|
| Distance: | 28 |
| Num_trans: | 57449 |
| All_trans: | HGNC:29105 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_001015000 |
| Entrez ID: | 548593 |
| Nearest Unigene: | Hs.729791 |
| Nearest Refseq: | NM_001014999 |
| Nearest Ensembl: | ENSG00000132207 |
| Gene Name: | pleckstrin homology and RhoGEF domain containing G5 |
| Gene Alias: | GIYD1 |
| Gene Description: | SLX1 homolog A, structure-specific endonuclease subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
