Difference between revisions of "TSS:Hg 237074.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_001353235:-10 NM_001353234:-10 NM_001282527:-10 NM_001198547:-10 ENST00000587971.5:137 ENST00000586314.5:142 AK091463:144 AK312562:160 ENST00000586309.1:171 ENST00000591917.5:350 ENST00000538587.5:368 AK299850:368 |
| − | |chr= | + | |chr=chr18 |
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance=- | + | |distance=-10 |
|distance_to_tss=7286 | |distance_to_tss=7286 | ||
| − | |end= | + | |end=34222460 |
|end_of_center_position=34222460 | |end_of_center_position=34222460 | ||
|entrez_id=100422944 | |entrez_id=100422944 | ||
| Line 11: | Line 11: | ||
|gene_alias=mir-3186 | |gene_alias=mir-3186 | ||
|gene_description=microRNA 3186 | |gene_description=microRNA 3186 | ||
| − | |gene_id= | + | |gene_id=8715 |
| − | |gene_name= | + | |gene_name=nucleolar protein 4 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:7870 |
| − | |gene_symbol= | + | |gene_symbol=NOL4 |
| − | |gene_synonyms= | + | |gene_synonyms=CT125 HRIHFB2255 NOLP |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:7870 |
|nearest_ensembl=ENSG00000266189 | |nearest_ensembl=ENSG00000266189 | ||
|nearest_promoter_id=NR_036152 | |nearest_promoter_id=NR_036152 | ||
|nearest_refseq=NR_036152 | |nearest_refseq=NR_036152 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
| − | |start= | + | |start=34222459 |
|start_of_center_position=34222459 | |start_of_center_position=34222459 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name=NM_001353235.2 NM_001282527.2 NM_001198547.2 NM_001353234.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_237074.1 | |tss_id=hg_237074.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=O94818 |
}} | }} | ||
Latest revision as of 12:51, 21 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 34222459 |
|---|---|
| End of the center position in the TSS region: | 34222460 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001353235.2 NM_001282527.2 NM_001198547.2 NM_001353234.2 |
|---|---|
| Distance: | -10 |
| Num_trans: | 12 |
| All_trans: | NM_001353235:-10 NM_001353234:-10 NM_001282527:-10 NM_001198547:-10 ENST00000587971.5:137 ENST00000586314.5:142 AK091463:144 AK312562:160 ENST00000586309.1:171 ENST00000591917.5:350 ENST00000538587.5:368 AK299850:368 |
TATA-Box annotation
| Distance to TSS: | 7286 |
|---|---|
| Nearest PromoterID: | NR_036152 |
| Entrez ID: | 100422944 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_036152 |
| Nearest Ensembl: | ENSG00000266189 |
| Gene Name: | nucleolar protein 4 |
| Gene Alias: | mir-3186 |
| Gene Description: | microRNA 3186 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
