Difference between revisions of "TSS:Hg 237464.1"
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_001199570:-68 AK289509:-72 AK090732:-89 ENST00000593074.5:-104 AK294748:-201 KJ893505:209 CU680510:209 BC013116:-240 LF207597:-272 MA443174:-272 LF367338:279 MA602915:279 ENST00000592017.5:-304 ENST00000360535.9:-306 NM_015526:-306 AJ427922:-306 AK092354:-307 ENST00000586457.1:-319 AK094738:-326 |
|chr=chr19 | |chr=chr19 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance=- | + | |distance=-68 |
|distance_to_tss=11 | |distance_to_tss=11 | ||
| − | |end= | + | |end=36032567 |
|end_of_center_position=36032567 | |end_of_center_position=36032567 | ||
|entrez_id=199786 | |entrez_id=199786 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=BCNP1 | + | |gene_alias=BCNP1{{!}}FAM129C |
| − | |gene_description= | + | |gene_description=niban apoptosis regulator 3 |
| − | |gene_id= | + | |gene_id=25999 |
| − | |gene_name= | + | |gene_name=CAP-Gly domain containing linker protein 3 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:24314 |
| − | |gene_symbol= | + | |gene_symbol=CLIP3 |
| − | |gene_synonyms= | + | |gene_synonyms=CLIPR-59 RSNL1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:24314 |
|nearest_ensembl=ENSG00000167483 | |nearest_ensembl=ENSG00000167483 | ||
|nearest_promoter_id=NM_001098524 | |nearest_promoter_id=NM_001098524 | ||
|nearest_refseq=NM_173544 | |nearest_refseq=NM_173544 | ||
|nearest_unigene=Hs.434133 | |nearest_unigene=Hs.434133 | ||
| − | |num_trans= | + | |num_trans=19 |
|species=human | |species=human | ||
| − | |start= | + | |start=36032566 |
|start_of_center_position=36032566 | |start_of_center_position=36032566 | ||
| − | |strand= | + | |strand=- |
| − | |transcript_name= | + | |transcript_name=NM_001199570.2 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_237464.1 | |tss_id=hg_237464.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q96DZ5 |
}} | }} | ||
Latest revision as of 13:00, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 36032566 |
|---|---|
| End of the center position in the TSS region: | 36032567 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001199570.2 |
|---|---|
| Distance: | -68 |
| Num_trans: | 19 |
| All_trans: | NM_001199570:-68 AK289509:-72 AK090732:-89 ENST00000593074.5:-104 AK294748:-201 KJ893505:209 CU680510:209 BC013116:-240 LF207597:-272 MA443174:-272 LF367338:279 MA602915:279 ENST00000592017.5:-304 ENST00000360535.9:-306 NM_015526:-306 AJ427922:-306 AK092354:-307 ENST00000586457.1:-319 AK094738:-326 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_001098524 |
| Entrez ID: | 199786 |
| Nearest Unigene: | Hs.434133 |
| Nearest Refseq: | NM_173544 |
| Nearest Ensembl: | ENSG00000167483 |
| Gene Name: | CAP-Gly domain containing linker protein 3 |
| Gene Alias: | BCNP1|FAM129C |
| Gene Description: | niban apoptosis regulator 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
