Difference between revisions of "TSS:Hg 241053.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |aC1= |
| − | |chr= | + | |all_trans=HGNC:11281 |
| + | |chr=chr5 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=63 |
|distance_to_tss=-46 | |distance_to_tss=-46 | ||
| − | |end= | + | |end=140558156 |
| + | |end_of_center_position=140558156 | ||
|entrez_id=10141 | |entrez_id=10141 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=C4orf6 | + | |gene_alias=C4orf6{{!}}aC1 |
|gene_description=long intergenic non-protein coding RNA 1587 | |gene_description=long intergenic non-protein coding RNA 1587 | ||
| − | |gene_id= | + | |gene_id=10011 |
| − | |gene_name= | + | |gene_name=steroid receptor RNA activator 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:11281 |
| − | |gene_symbol= | + | |gene_symbol=SRA1 |
| − | |gene_synonyms= | + | |gene_synonyms=SRA STRAA1 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:11281 |
|nearest_ensembl=ENSG00000082929 | |nearest_ensembl=ENSG00000082929 | ||
|nearest_promoter_id=NR_126517 | |nearest_promoter_id=NR_126517 | ||
|nearest_refseq=NM_005750 | |nearest_refseq=NM_005750 | ||
|nearest_unigene=Hs.177972 | |nearest_unigene=Hs.177972 | ||
| − | |num_trans= | + | |num_trans=10011 |
|species=human | |species=human | ||
| − | |start= | + | |start=140558155 |
| − | |strand= | + | |start_of_center_position=140558155 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name=AF318361 |
| + | |tss_classification=yes | ||
|tss_id=hg_241053.1 | |tss_id=hg_241053.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:17, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 140558155 |
|---|---|
| End of the center position in the TSS region: | 140558156 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AF318361 |
|---|---|
| Distance: | 63 |
| Num_trans: | 10011 |
| All_trans: | HGNC:11281 |
TATA-Box annotation
| Distance to TSS: | -46 |
|---|---|
| Nearest PromoterID: | NR_126517 |
| Entrez ID: | 10141 |
| Nearest Unigene: | Hs.177972 |
| Nearest Refseq: | NM_005750 |
| Nearest Ensembl: | ENSG00000082929 |
| Gene Name: | steroid receptor RNA activator 1 |
| Gene Alias: | C4orf6|aC1 |
| Gene Description: | long intergenic non-protein coding RNA 1587 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
