Difference between revisions of "TSS:Hg 242697.1"
From referenceTSS
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|TRAFIP20= | |TRAFIP20= | ||
|ZIMP7= | |ZIMP7= | ||
| − | |all_trans= | + | |all_trans=HGNC:30377 |
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-83 | |distance=-83 | ||
|distance_to_tss=-40952 | |distance_to_tss=-40952 | ||
| − | |end= | + | |end=143804068 |
|end_of_center_position=143804068 | |end_of_center_position=143804068 | ||
|entrez_id=83637 | |entrez_id=83637 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_031449 | |nearest_refseq=NM_031449 | ||
|nearest_unigene=Hs.77978 | |nearest_unigene=Hs.77978 | ||
| − | |num_trans= | + | |num_trans=23513 |
|species=human | |species=human | ||
| − | |start= | + | |start=143804067 |
|start_of_center_position=143804067 | |start_of_center_position=143804067 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000526832.5 BC063590 | |transcript_name=ENST00000526832.5 BC063590 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242697.1 | |tss_id=hg_242697.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=H0YCG0 | |uniprot_id=H0YCG0 | ||
}} | }} | ||
Latest revision as of 14:53, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 143804067 |
|---|---|
| End of the center position in the TSS region: | 143804068 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000526832.5 BC063590 |
|---|---|
| Distance: | -83 |
| Num_trans: | 23513 |
| All_trans: | HGNC:30377 |
TATA-Box annotation
| Distance to TSS: | -40952 |
|---|---|
| Nearest PromoterID: | NM_001300959 |
| Entrez ID: | 83637 |
| Nearest Unigene: | Hs.77978 |
| Nearest Refseq: | NM_031449 |
| Nearest Ensembl: | ENSG00000122515 |
| Gene Name: | scribble planar cell polarity protein |
| Gene Alias: | NET27|TRAFIP20|ZIMP7|hZIMP7 |
| Gene Description: | zinc finger MIZ-type containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
