Difference between revisions of "TSS:Hg 242758.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |RAP1= |
| − | |chr= | + | |all_trans=HGNC:1067 |
| + | |chr=chr8 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=10 |
|distance_to_tss=-4 | |distance_to_tss=-4 | ||
| − | |end= | + | |end=22165177 |
| + | |end_of_center_position=22165168 | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.363184 | |gc_percent=0.363184 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
| − | |gene_id= | + | |gene_id=649 |
| − | |gene_name= | + | |gene_name=bone morphogenetic protein 1 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:1067 |
| − | |gene_symbol= | + | |gene_symbol=BMP1 |
| − | |gene_synonyms= | + | |gene_synonyms=BMP-1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:1067 |
|nearest_ensembl=ENSG00000154710 | |nearest_ensembl=ENSG00000154710 | ||
|nearest_promoter_id=NM_001287061 | |nearest_promoter_id=NM_001287061 | ||
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=649 |
| + | |rabex-5= | ||
|species=human | |species=human | ||
| − | |start= | + | |start=22165157 |
| + | |start_of_center_position=22165167 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000520970.5 AB209590 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242758.1 | |tss_id=hg_242758.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=P13497 Q59F71 |
}} | }} | ||
Latest revision as of 14:54, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22165167 |
|---|---|
| End of the center position in the TSS region: | 22165168 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000520970.5 AB209590 |
|---|---|
| Distance: | 10 |
| Num_trans: | 649 |
| All_trans: | HGNC:1067 |
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_001287061 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | bone morphogenetic protein 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
