Difference between revisions of "TSS:Hg 242843.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:6947 |
| − | |chr= | + | |chr=chr8 |
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=57 | |distance=57 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| − | |end= | + | |end=47960128 |
|end_of_center_position=47960119 | |end_of_center_position=47960119 | ||
|entrez_id=9069 | |entrez_id=9069 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_012129 | |nearest_refseq=NM_012129 | ||
|nearest_unigene=Hs.731917 | |nearest_unigene=Hs.731917 | ||
| − | |num_trans= | + | |num_trans=4173 |
|species=human | |species=human | ||
| − | |start= | + | |start=47960109 |
|start_of_center_position=47960118 | |start_of_center_position=47960118 | ||
| − | |strand= | + | |strand=+ |
|transcript_name=ENST00000518221.5 | |transcript_name=ENST00000518221.5 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_242843.1 | |tss_id=hg_242843.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=E5RFR3 | |uniprot_id=E5RFR3 | ||
}} | }} | ||
Latest revision as of 14:56, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47960118 |
|---|---|
| End of the center position in the TSS region: | 47960119 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000518221.5 |
|---|---|
| Distance: | 57 |
| Num_trans: | 4173 |
| All_trans: | HGNC:6947 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001185073 |
| Entrez ID: | 9069 |
| Nearest Unigene: | Hs.731917 |
| Nearest Refseq: | NM_012129 |
| Nearest Ensembl: | ENSG00000157224 |
| Gene Name: | minichromosome maintenance complex component 4 |
| Gene Alias: | - |
| Gene Description: | claudin 12 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
