Difference between revisions of "TSS:Hg 242848.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|ZWS= | |ZWS= | ||
|ZWS1= | |ZWS1= | ||
| − | |chr= | + | |all_trans=HGNC:6947 |
| + | |chr=chr8 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-10 |
| − | |distance_to_tss= | + | |distance_to_tss=10544 |
| − | |end= | + | |end=47974959 |
|end_of_center_position=47974950 | |end_of_center_position=47974950 | ||
|entrez_id=5189 | |entrez_id=5189 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias=HMLR1 | + | |gene_alias=HMLR1{{!}}PBD1A{{!}}PBD1B{{!}}ZWS{{!}}ZWS1 |
|gene_description=peroxisomal biogenesis factor 1 | |gene_description=peroxisomal biogenesis factor 1 | ||
| − | |gene_name= | + | |gene_id=4173 |
| + | |gene_name=minichromosome maintenance complex component 4 | ||
| + | |gene_source=HGNC:6947 | ||
| + | |gene_symbol=MCM4 | ||
| + | |gene_synonyms=CDC54 MGC33310 P1-Cdc21 hCdc21 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6947 | ||
|nearest_ensembl=ENSG00000127980 | |nearest_ensembl=ENSG00000127980 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_000466 |
|nearest_refseq=NM_000466 | |nearest_refseq=NM_000466 | ||
|nearest_unigene=Hs.164682 | |nearest_unigene=Hs.164682 | ||
| − | |num_trans= | + | |num_trans=4173 |
|species=human | |species=human | ||
| − | |start= | + | |start=47974939 |
|start_of_center_position=47974949 | |start_of_center_position=47974949 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=37(TTCCATAAGAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AM493756 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_242848.1 | |tss_id=hg_242848.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A4FS09 | ||
}} | }} | ||
Latest revision as of 14:56, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47974949 |
|---|---|
| End of the center position in the TSS region: | 47974950 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AM493756 |
|---|---|
| Distance: | -10 |
| Num_trans: | 4173 |
| All_trans: | HGNC:6947 |
TATA-Box annotation
| Distance to TSS: | 10544 |
|---|---|
| Nearest PromoterID: | NM_000466 |
| Entrez ID: | 5189 |
| Nearest Unigene: | Hs.164682 |
| Nearest Refseq: | NM_000466 |
| Nearest Ensembl: | ENSG00000127980 |
| Gene Name: | minichromosome maintenance complex component 4 |
| Gene Alias: | HMLR1|PBD1A|PBD1B|ZWS|ZWS1 |
| Gene Description: | peroxisomal biogenesis factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(TTCCATAAGAGG,-,0.00) |
