Difference between revisions of "TSS:Hg 243034.1"
From referenceTSS
| Line 11: | Line 11: | ||
|PLEC1b= | |PLEC1b= | ||
|PLTN= | |PLTN= | ||
| − | |all_trans= | + | |all_trans=HGNC:9655 |
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 33: | Line 33: | ||
|nearest_refseq=NM_000445 | |nearest_refseq=NM_000445 | ||
|nearest_unigene=Hs.434248 | |nearest_unigene=Hs.434248 | ||
| − | |num_trans= | + | |num_trans=5774 |
|species=human | |species=human | ||
|start=109451258 | |start=109451258 | ||
| Line 39: | Line 39: | ||
|strand=- | |strand=- | ||
|tata_box=43(GCTTAAAGAGGC,+,0.00) | |tata_box=43(GCTTAAAGAGGC,+,0.00) | ||
| − | |transcript_name=ENST00000412145.5 ENST00000446349.5 | + | |transcript_name=ENST00000412145.5 ENST00000446349.5 BX648253 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_243034.1 | |tss_id=hg_243034.1 | ||
Latest revision as of 15:00, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109451258 |
|---|---|
| End of the center position in the TSS region: | 109451259 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000412145.5 ENST00000446349.5 BX648253 |
|---|---|
| Distance: | -125 |
| Num_trans: | 5774 |
| All_trans: | HGNC:9655 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_201378 |
| Entrez ID: | 5339 |
| Nearest Unigene: | Hs.434248 |
| Nearest Refseq: | NM_000445 |
| Nearest Ensembl: | ENSG00000178209 |
| Gene Name: | protein tyrosine phosphatase non-receptor type 3 |
| Gene Alias: | EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN |
| Gene Description: | plectin |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 43(GCTTAAAGAGGC,+,0.00) |
