Difference between revisions of "TSS:Hg 243095.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |PCOLC= |
| − | |chr= | + | |PCP= |
| + | |PCP2= | ||
| + | |TLD= | ||
| + | |all_trans=HGNC:21461 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| − | |distance= | + | |distance=63 |
| − | |distance_to_tss= | + | |distance_to_tss=-85 |
| − | |end= | + | |end=122898173 |
| + | |end_of_center_position=122898173 | ||
|entrez_id=649 | |entrez_id=649 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=OI13 | + | |gene_alias=OI13{{!}}PCOLC{{!}}PCP{{!}}PCP2{{!}}TLD |
|gene_description=bone morphogenetic protein 1 | |gene_description=bone morphogenetic protein 1 | ||
| − | |gene_id= | + | |gene_id=54542 |
| − | |gene_name= | + | |gene_name=ring finger and CCCH-type domains 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:21461 |
| − | |gene_symbol= | + | |gene_symbol=RC3H2 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ20301 FLJ20713 RNF164 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:21461 |
|nearest_ensembl=ENSG00000168487 | |nearest_ensembl=ENSG00000168487 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_006129 |
|nearest_refseq=NM_001199 | |nearest_refseq=NM_001199 | ||
|nearest_unigene=Hs.1274 | |nearest_unigene=Hs.1274 | ||
| − | |num_trans= | + | |num_trans=54542 |
|species=human | |species=human | ||
| − | |start= | + | |start=122898172 |
| − | |strand= | + | |start_of_center_position=122898172 |
| − | |transcript_name= | + | |strand=- |
| − | |tss_classification= | + | |transcript_name=ENST00000373670.5 AF255303 |
| + | |tss_classification=no | ||
|tss_id=hg_243095.1 | |tss_id=hg_243095.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A024R899 |
}} | }} | ||
Latest revision as of 15:01, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 122898172 |
|---|---|
| End of the center position in the TSS region: | 122898173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373670.5 AF255303 |
|---|---|
| Distance: | 63 |
| Num_trans: | 54542 |
| All_trans: | HGNC:21461 |
TATA-Box annotation
| Distance to TSS: | -85 |
|---|---|
| Nearest PromoterID: | NM_006129 |
| Entrez ID: | 649 |
| Nearest Unigene: | Hs.1274 |
| Nearest Refseq: | NM_001199 |
| Nearest Ensembl: | ENSG00000168487 |
| Gene Name: | ring finger and CCCH-type domains 2 |
| Gene Alias: | OI13|PCOLC|PCP|PCP2|TLD |
| Gene Description: | bone morphogenetic protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
