Difference between revisions of "TSS:Hg 243970.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK309851:-9 ENST00000621635.4:-23 NM_001287344:-23 uc010nno.3:-23 |chr=chrX |cpg_percent=0.06 |distance=-9 |distance_to_tss=23 |end=101390773 |entrez_id...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |AT= |
| + | |ATK= | ||
| + | |BPK= | ||
| + | |IMD1= | ||
| + | |PSCTK1= | ||
| + | |XLA= | ||
| + | |all_trans=HGNC:14064 | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=10 |
|distance_to_tss=23 | |distance_to_tss=23 | ||
| − | |end= | + | |end=48801783 |
| + | |end_of_center_position=48801783 | ||
|entrez_id=695 | |entrez_id=695 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=AGMX1 | + | |gene_alias=AGMX1{{!}}AT{{!}}ATK{{!}}BPK{{!}}IGHD3{{!}}IMD1{{!}}PSCTK1{{!}}XLA |
|gene_description=Bruton tyrosine kinase | |gene_description=Bruton tyrosine kinase | ||
| − | |gene_id= | + | |gene_id=10013 |
| − | |gene_name= | + | |gene_name=histone deacetylase 6 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:14064 |
| − | |gene_symbol= | + | |gene_symbol=HDAC6 |
| − | |gene_synonyms= | + | |gene_synonyms=FLJ16239 HD6 JM21 KIAA0901 PPP1R90 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:14064 |
|nearest_ensembl=ENSG00000010671 | |nearest_ensembl=ENSG00000010671 | ||
|nearest_promoter_id=NM_001287344 | |nearest_promoter_id=NM_001287344 | ||
|nearest_refseq=NM_000061 | |nearest_refseq=NM_000061 | ||
|nearest_unigene=Hs.159494 | |nearest_unigene=Hs.159494 | ||
| − | |num_trans= | + | |num_trans=10013 |
|species=human | |species=human | ||
| − | |start= | + | |start=48801782 |
| − | |strand= | + | |start_of_center_position=48801782 |
| − | |tata_box= | + | |strand=+ |
| − | |transcript_name= | + | |tata_box=-80(CCGCCTAAAGGG,-,0.00) |
| + | |transcript_name=ENST00000469223.5 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_243970.1 | |tss_id=hg_243970.1 | ||
Latest revision as of 15:20, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48801782 |
|---|---|
| End of the center position in the TSS region: | 48801783 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000469223.5 |
|---|---|
| Distance: | 10 |
| Num_trans: | 10013 |
| All_trans: | HGNC:14064 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_001287344 |
| Entrez ID: | 695 |
| Nearest Unigene: | Hs.159494 |
| Nearest Refseq: | NM_000061 |
| Nearest Ensembl: | ENSG00000010671 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA |
| Gene Description: | Bruton tyrosine kinase |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(CCGCCTAAAGGG,-,0.00) |
