Difference between revisions of "TSS:Hg 53380.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|PP3105= | |PP3105= | ||
|ZIP8= | |ZIP8= | ||
| − | |all_trans=NM_001135147:13 ENST00000424970.6 | + | |all_trans=NM_001135147:13 ENST00000424970.6:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 AB040120:127 ENST00000514000.5:-164 AF193052:-176 BC012125:-201 ENST00000356736.5:-209 ENST00000512657.5:-209 NM_001135146:-209 |
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 13: | Line 13: | ||
|entrez_id=64116 | |entrez_id=64116 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=BIGM103 | + | |gene_alias=BIGM103{{!}}CDG2N{{!}}LZT-Hs6{{!}}PP3105{{!}}ZIP8 |
|gene_description=solute carrier family 39 member 8 | |gene_description=solute carrier family 39 member 8 | ||
|gene_id=64116 | |gene_id=64116 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_022154 | |nearest_refseq=NM_022154 | ||
|nearest_unigene=Hs.288034 | |nearest_unigene=Hs.288034 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=102345265 | |start=102345265 | ||
|start_of_center_position=102345269 | |start_of_center_position=102345269 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-7(CCCTTTAAACGC,+,0.00) |
| − | |transcript_name=NM_001135147 | + | |transcript_name=NM_001135147.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_53380.1 | |tss_id=hg_53380.1 | ||
Latest revision as of 01:52, 22 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102345269 |
|---|---|
| End of the center position in the TSS region: | 102345270 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001135147.1 |
|---|---|
| Distance: | 13 |
| Num_trans: | 12 |
| All_trans: | NM_001135147:13 ENST00000424970.6:61 AK304274:61 NM_022154:75 ENST00000394833.6:127 AB040120:127 ENST00000514000.5:-164 AF193052:-176 BC012125:-201 ENST00000356736.5:-209 ENST00000512657.5:-209 NM_001135146:-209 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_001135147 |
| Entrez ID: | 64116 |
| Nearest Unigene: | Hs.288034 |
| Nearest Refseq: | NM_022154 |
| Nearest Ensembl: | ENSG00000138821 |
| Gene Name: | solute carrier family 39 member 8 |
| Gene Alias: | BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 |
| Gene Description: | solute carrier family 39 member 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(CCCTTTAAACGC,+,0.00) |
