Difference between revisions of "TSS:Hg 82821.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:3490 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=10 | |distance_to_tss=10 | ||
|end=13986510 | |end=13986510 | ||
| + | |end_of_center_position=13986505 | ||
|entrez_id=2115 | |entrez_id=2115 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| Line 11: | Line 12: | ||
|gene_description=ETS variant 1 | |gene_description=ETS variant 1 | ||
|gene_id=2115 | |gene_id=2115 | ||
| − | |gene_name=ETS variant 1 | + | |gene_name=ETS variant transcription factor 1 |
|gene_source=HGNC:3490 | |gene_source=HGNC:3490 | ||
|gene_symbol=ETV1 | |gene_symbol=ETV1 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:3490 | |hgnc_mgi_id=HGNC:3490 | ||
|nearest_ensembl=ENSG00000006468 | |nearest_ensembl=ENSG00000006468 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001163152 |
|nearest_refseq=NM_004956 | |nearest_refseq=NM_004956 | ||
|nearest_unigene=Hs.22634 | |nearest_unigene=Hs.22634 | ||
| − | |num_trans= | + | |num_trans=2115 |
|species=human | |species=human | ||
|start=13986498 | |start=13986498 | ||
| + | |start_of_center_position=13986504 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(AGCTCTAAAAGA,-,0.00) |
| − | |transcript_name=ENST00000420159.6 ENST00000399357.7 ENST00000403527.5 | + | |transcript_name=ENST00000420159.6 ENST00000399357.7 ENST00000403527.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_82821.1 | |tss_id=hg_82821.1 | ||
Latest revision as of 12:30, 22 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 13986504 |
|---|---|
| End of the center position in the TSS region: | 13986505 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000420159.6 ENST00000399357.7 ENST00000403527.5 |
|---|---|
| Distance: | -4 |
| Num_trans: | 2115 |
| All_trans: | HGNC:3490 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001163152 |
| Entrez ID: | 2115 |
| Nearest Unigene: | Hs.22634 |
| Nearest Refseq: | NM_004956 |
| Nearest Ensembl: | ENSG00000006468 |
| Gene Name: | ETS variant transcription factor 1 |
| Gene Alias: | ER81 |
| Gene Description: | ETS variant 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(AGCTCTAAAAGA,-,0.00) |
