Difference between revisions of "TSS:Hg 87557.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |RET/PCM-1= |
| + | |all_trans=HGNC:8727 | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
|end=17922866 | |end=17922866 | ||
| + | |end_of_center_position=17922852 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4{{!}}RET/PCM-1 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=HGNC:8727 | |hgnc_mgi_id=HGNC:8727 | ||
|nearest_ensembl=ENSG00000078674 | |nearest_ensembl=ENSG00000078674 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001352660 |
|nearest_refseq=NM_006197 | |nearest_refseq=NM_006197 | ||
|nearest_unigene=Hs.491148 | |nearest_unigene=Hs.491148 | ||
| − | |num_trans= | + | |num_trans=5108 |
|species=human | |species=human | ||
|start=17922837 | |start=17922837 | ||
| + | |start_of_center_position=17922851 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-42(GCTTAAAGAGCC,+,0.00) |
| − | |transcript_name=ENST00000325083.12 | + | |transcript_name=ENST00000325083.12 L27841 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_87557.1 | |tss_id=hg_87557.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q15154 |
}} | }} | ||
Latest revision as of 14:12, 22 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17922851 |
|---|---|
| End of the center position in the TSS region: | 17922852 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325083.12 L27841 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5108 |
| All_trans: | HGNC:8727 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001352660 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4|RET/PCM-1 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -42(GCTTAAAGAGCC,+,0.00) |
