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Difference between revisions of "TSS:Hg 87558.1"

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{{TSSDetail
 
{{TSSDetail
 
|RET/PCM-1=
 
|RET/PCM-1=
|all_trans=ENST00000518930.1:0 NM_001352653:20 NM_001352649:20 NM_001352648:20 NM_001352654:20 NM_001352636:20 NM_001352652:20 NM_001352633:20 NM_001352637:20 NM_001352657:20 NM_001352635:20 NM_001352644:20 NM_001352640:20 NM_001352638:20 NM_001352647:20 NM_001352646:20 NM_001352632:20 NM_001352658:20 NM_001352655:20 NM_001352650:20 NM_001315507:20 NM_006197:20 NM_001352642:20 NM_001352634:20 NM_001352645:20 NM_001352643:20 NM_001352656:20 NM_001352641:20 NM_001352639:20 NM_001352651:20 NR_148032:20 ENST00000517545.5:22 ENST00000517730.5:22 BC098391:22 AK307583:22 ENST00000518537.5:31 BC000453:31 ENST00000518936.5:38 BC065022:38 ENST00000523055.5:42 BC027477:42 LF372130:58 MA607707:58 ENST00000519253.5:60 BC140946:60 NM_001352660:-101 NM_001352659:-101 NM_001315508:-101 LF384362:-101 MA619939:-101 L27841:-111 ENST00000325083.12:-118
+
|all_trans=HGNC:8727
 
|chr=chr8
 
|chr=chr8
 
|cpg_percent=0.125
 
|cpg_percent=0.125
Line 23: Line 23:
 
|nearest_refseq=NM_006197
 
|nearest_refseq=NM_006197
 
|nearest_unigene=Hs.491148
 
|nearest_unigene=Hs.491148
|num_trans=52
+
|num_trans=5108
 
|species=human
 
|species=human
 
|start=17922957
 
|start=17922957

Latest revision as of 14:12, 22 July 2021

Basic information about the TSS


TSS ID:hg_87558.1
Species:human
Chr:chr8
TSS Classification:yes
Start:17922957
End:17922968
Strand:+
TSS Score:1
Start of the center position in the TSS region:17922962
End of the center position in the TSS region:17922963



Gene and protein annotation


Transcript_name:ENST00000518930.1
Distance:0
GeneID:5108
HGNC/MGI_ID:HGNC:8727
UniProt_ID:
Gene_name:pericentriolar material 1
Gene_symbol:PCM1
Gene_synonyms:PTC4
Gene_source:HGNC:8727



Transcript annotation


Transcript_name:ENST00000518930.1
Distance:0
Num_trans:5108
All_trans:HGNC:8727



TATA-Box annotation


Distance to TSS:-25
Nearest PromoterID:NM_001352644
Entrez ID:5108
Nearest Unigene:Hs.491148
Nearest Refseq:NM_006197
Nearest Ensembl:ENSG00000078674
Gene Name:pericentriolar material 1
Gene Alias:PTC4|RET/PCM-1
Gene Description:pericentriolar material 1
Gene Type:protein-coding
CpG%:0.125
GC%:0.701493
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):