Difference between revisions of "TSS:Hg 92034.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|MP44= | |MP44= | ||
|MTSG1= | |MTSG1= | ||
| − | |all_trans=FJ458440:-92 FJ458441:110 ENST00000381869.5:200 ENST00000523718.5:200 NM_001001925:200 NM_001001924 | + | |all_trans=NM_001363057:23 NM_001363060:23 NM_001363059:-87 NM_001363058:-87 NM_001363062:-87 NR_156437:-87 FJ458440:-92 LF213941:-101 MA449518:-101 LF208094:-102 MA443671:-102 FJ458441:110 ENST00000381869.5:200 ENST00000523718.5:200 NM_001001925:200 NM_001001924:200 AK310871:200 AY363099:240 FJ458439:-414 NM_001363061:-442 ENST00000262102.10:449 BC136320:449 BC171765:449 |
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=23 |
| − | |distance_to_tss=- | + | |distance_to_tss=-33 |
|end=17801137 | |end=17801137 | ||
|end_of_center_position=17801127 | |end_of_center_position=17801127 | ||
|entrez_id=57509 | |entrez_id=57509 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=ATBP | + | |gene_alias=ATBP{{!}}ATIP{{!}}ATIP3{{!}}ICIS{{!}}MP44{{!}}MTSG1 |
| − | |gene_description=microtubule associated | + | |gene_description=microtubule associated scaffold protein 1 |
|gene_id=57509 | |gene_id=57509 | ||
| − | |gene_name=microtubule associated | + | |gene_name=microtubule associated scaffold protein 1 |
|gene_source=HGNC:29789 | |gene_source=HGNC:29789 | ||
|gene_symbol=MTUS1 | |gene_symbol=MTUS1 | ||
| − | |gene_synonyms=ATBP ATIP1 DKFZp586D1519 FLJ14295 ICIS KIAA1288 MP44 MTSG1 | + | |gene_synonyms=ATBP ATIP1 ATIP3 DKFZp586D1519 FLJ14295 ICIS KIAA1288 MP44 MTSG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29789 | |hgnc_mgi_id=HGNC:29789 | ||
|nearest_ensembl=ENSG00000129422 | |nearest_ensembl=ENSG00000129422 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363060 |
|nearest_refseq=NM_020749 | |nearest_refseq=NM_020749 | ||
|nearest_unigene=Hs.7946 | |nearest_unigene=Hs.7946 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=human | |species=human | ||
|start=17801116 | |start=17801116 | ||
|start_of_center_position=17801126 | |start_of_center_position=17801126 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001363058.2 NM_001363059.2 NM_001363057.2 NM_001363062.2 NM_001363060.2 NR_156437.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_92034.1 | |tss_id=hg_92034.1 | ||
Latest revision as of 15:47, 22 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17801126 |
|---|---|
| End of the center position in the TSS region: | 17801127 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001363058.2 NM_001363059.2 NM_001363057.2 NM_001363062.2 NM_001363060.2 NR_156437.2 |
|---|---|
| Distance: | 23 |
| Num_trans: | 23 |
| All_trans: | NM_001363057:23 NM_001363060:23 NM_001363059:-87 NM_001363058:-87 NM_001363062:-87 NR_156437:-87 FJ458440:-92 LF213941:-101 MA449518:-101 LF208094:-102 MA443671:-102 FJ458441:110 ENST00000381869.5:200 ENST00000523718.5:200 NM_001001925:200 NM_001001924:200 AK310871:200 AY363099:240 FJ458439:-414 NM_001363061:-442 ENST00000262102.10:449 BC136320:449 BC171765:449 |
TATA-Box annotation
| Distance to TSS: | -33 |
|---|---|
| Nearest PromoterID: | NM_001363060 |
| Entrez ID: | 57509 |
| Nearest Unigene: | Hs.7946 |
| Nearest Refseq: | NM_020749 |
| Nearest Ensembl: | ENSG00000129422 |
| Gene Name: | microtubule associated scaffold protein 1 |
| Gene Alias: | ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 |
| Gene Description: | microtubule associated scaffold protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
