Difference between revisions of "TSS:Mm 100007.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_147217:0 uc007mfx.2:0 BC031439:13 ENSMUST00000136785.1:-149 ENSMUST00000021071.13:-179 ENSMUST00000053361.11:-187 AK128950:-187 AK014308:189 ENSMUST0...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_147217 | + | |3200002M13Rik= |
| + | |Raig3= | ||
| + | |all_trans=NM_147217:0 BC031439:13 ENSMUST00000136785.1:-149 ENSMUST00000021071.13:-179 ENSMUST00000053361.11:-187 AK128950:-187 AK014308:189 ENSMUST00000142262.1:277 AY079516:-488 ENSMUST00000177952.7:-489 NM_001110338:-489 NM_001110337:-497 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
|end=114852042 | |end=114852042 | ||
| + | |end_of_center_position=114852036 | ||
|entrez_id=70355 | |entrez_id=70355 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=1110028I06Rik | + | |gene_alias=1110028I06Rik{{!}}3200002M13Rik{{!}}Raig3 |
| − | |gene_description= | + | |gene_description=G protein-coupled receptor, family C, group 5, member C |
|gene_id=70355 | |gene_id=70355 | ||
| − | |gene_name= | + | |gene_name=G protein-coupled receptor, family C, group 5, member C |
|gene_source=MGI:1917605 | |gene_source=MGI:1917605 | ||
|gene_symbol=Gprc5c | |gene_symbol=Gprc5c | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_147217 | |nearest_refseq=NM_147217 | ||
|nearest_unigene=Mm.242413 | |nearest_unigene=Mm.242413 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=114852028 | |start=114852028 | ||
| + | |start_of_center_position=114852035 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_147217 | + | |transcript_name=NM_147217.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100007.1 | |tss_id=mm_100007.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8K3J9 |
}} | }} | ||
Latest revision as of 10:29, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114852035 |
|---|---|
| End of the center position in the TSS region: | 114852036 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_147217.3 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | NM_147217:0 BC031439:13 ENSMUST00000136785.1:-149 ENSMUST00000021071.13:-179 ENSMUST00000053361.11:-187 AK128950:-187 AK014308:189 ENSMUST00000142262.1:277 AY079516:-488 ENSMUST00000177952.7:-489 NM_001110338:-489 NM_001110337:-497 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_147217 |
| Entrez ID: | 70355 |
| Nearest Unigene: | Mm.242413 |
| Nearest Refseq: | NM_147217 |
| Nearest Ensembl: | ENSMUSG00000051043 |
| Gene Name: | G protein-coupled receptor, family C, group 5, member C |
| Gene Alias: | 1110028I06Rik|3200002M13Rik|Raig3 |
| Gene Description: | G protein-coupled receptor, family C, group 5, member C |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
