Difference between revisions of "TSS:Mm 100111.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc007miq.1:431 BC117762:431 BC126953:431 ENSMUST00000021134.9:445 ENSMUST00000106481.8:445 NM_029557:460 uc007mir.1:460 uc011yhp.1:460 ENSMUST0000012976...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1923515 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-461 | |distance_to_tss=-461 | ||
|end=115814279 | |end=115814279 | ||
| + | |end_of_center_position=115814278 | ||
|entrez_id=76265 | |entrez_id=76265 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_029557 | |nearest_refseq=NM_029557 | ||
|nearest_unigene=Mm.275438 | |nearest_unigene=Mm.275438 | ||
| − | |num_trans= | + | |num_trans=76265 |
|species=mouse | |species=mouse | ||
|start=115814276 | |start=115814276 | ||
| + | |start_of_center_position=115814277 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC117762 BC126953 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100111.1 | |tss_id=mm_100111.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q08ED2 | + | |uniprot_id=Q08ED2 |
}} | }} | ||
Latest revision as of 10:31, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 115814277 |
|---|---|
| End of the center position in the TSS region: | 115814278 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC117762 BC126953 |
|---|---|
| Distance: | 431 |
| Num_trans: | 76265 |
| All_trans: | MGI:1923515 |
TATA-Box annotation
| Distance to TSS: | -461 |
|---|---|
| Nearest PromoterID: | NM_029557 |
| Entrez ID: | 76265 |
| Nearest Unigene: | Mm.275438 |
| Nearest Refseq: | NM_029557 |
| Nearest Ensembl: | ENSMUSG00000020781 |
| Gene Name: | tRNA splicing endonuclease subunit 54 |
| Gene Alias: | 0610034P02Rik |
| Gene Description: | tRNA splicing endonuclease subunit 54 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
