Difference between revisions of "TSS:Mm 100125.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000132961.1:-47 NM_001162998:-47 uc011yhr.1:-47 AK003745:-47 AK156823:-104 BC038330:263 |chr=chr11 |cpg_percent=0.015 |distance=-47 |distance_t...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1915778 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=53 | |distance_to_tss=53 | ||
|end=115912076 | |end=115912076 | ||
| + | |end_of_center_position=115912070 | ||
|entrez_id=68528 | |entrez_id=68528 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=1110017F19Rik | + | |gene_alias=1110017F19Rik{{!}}Eln |
|gene_description=small integral membrane protein 6 | |gene_description=small integral membrane protein 6 | ||
|gene_id=68528 | |gene_id=68528 | ||
| Line 14: | Line 15: | ||
|gene_source=MGI:1915778 | |gene_source=MGI:1915778 | ||
|gene_symbol=Smim6 | |gene_symbol=Smim6 | ||
| − | |gene_synonyms=1110017F19Rik | + | |gene_synonyms=1110017F19Rik ELN endoregulin |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1915778 | |hgnc_mgi_id=MGI:1915778 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001162998 | |nearest_refseq=NM_001162998 | ||
|nearest_unigene=Mm.441893 | |nearest_unigene=Mm.441893 | ||
| − | |num_trans= | + | |num_trans=68528 |
|species=mouse | |species=mouse | ||
|start=115912063 | |start=115912063 | ||
| + | |start_of_center_position=115912069 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000132961 | + | |transcript_name=ENSMUST00000132961.1 AK003745 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100125.1 | |tss_id=mm_100125.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q3U0I6 | |uniprot_id=Q3U0I6 | ||
}} | }} | ||
Latest revision as of 10:31, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 115912069 |
|---|---|
| End of the center position in the TSS region: | 115912070 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000132961.1 AK003745 |
|---|---|
| Distance: | -47 |
| Num_trans: | 68528 |
| All_trans: | MGI:1915778 |
TATA-Box annotation
| Distance to TSS: | 53 |
|---|---|
| Nearest PromoterID: | NM_001162998 |
| Entrez ID: | 68528 |
| Nearest Unigene: | Mm.441893 |
| Nearest Refseq: | NM_001162998 |
| Nearest Ensembl: | ENSMUSG00000075420 |
| Gene Name: | small integral membrane protein 6 |
| Gene Alias: | 1110017F19Rik|Eln |
| Gene Description: | small integral membrane protein 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
