Difference between revisions of "TSS:Mm 100170.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|Sk1= | |Sk1= | ||
|Spk1= | |Spk1= | ||
| − | |all_trans= | + | |all_trans=MGI:1316649 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 11: | Line 11: | ||
|entrez_id=20698 | |entrez_id=20698 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=1110006G24Rik | + | |gene_alias=1110006G24Rik{{!}}Sk1{{!}}Spk1 |
|gene_description=sphingosine kinase 1 | |gene_description=sphingosine kinase 1 | ||
|gene_id=20698 | |gene_id=20698 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_011451 | |nearest_refseq=NM_011451 | ||
|nearest_unigene=Mm.20944 | |nearest_unigene=Mm.20944 | ||
| − | |num_trans= | + | |num_trans=20698 |
|species=mouse | |species=mouse | ||
|start=116531996 | |start=116531996 | ||
|start_of_center_position=116532005 | |start_of_center_position=116532005 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=54(GACTTTAAGAAG,-,0.00) |
| − | |transcript_name=ENSMUST00000100201.9 | + | |transcript_name=ENSMUST00000100201.9 AF068748 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100170.1 | |tss_id=mm_100170.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=O88885 Q8CI15 | + | |uniprot_id=O88885 Q8CI15 |
}} | }} | ||
Latest revision as of 10:32, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 116532005 |
|---|---|
| End of the center position in the TSS region: | 116532006 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000100201.9 AF068748 |
|---|---|
| Distance: | -86 |
| Num_trans: | 20698 |
| All_trans: | MGI:1316649 |
TATA-Box annotation
| Distance to TSS: | 94 |
|---|---|
| Nearest PromoterID: | NM_001172475 |
| Entrez ID: | 20698 |
| Nearest Unigene: | Mm.20944 |
| Nearest Refseq: | NM_011451 |
| Nearest Ensembl: | ENSMUSG00000061878 |
| Gene Name: | sphingosine kinase 1 |
| Gene Alias: | 1110006G24Rik|Sk1|Spk1 |
| Gene Description: | sphingosine kinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 54(GACTTTAAGAAG,-,0.00) |
