Difference between revisions of "TSS:Mm 100183.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000003947= | |OTTMUSG00000003947= | ||
| − | |all_trans= | + | |all_trans=MGI:3649529 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 11: | Line 11: | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=Gm11744 | |gene_alias=Gm11744 | ||
| − | |gene_description= | + | |gene_description=photoreceptor disc component |
|gene_id=100038570 | |gene_id=100038570 | ||
| − | |gene_name= | + | |gene_name=photoreceptor disc component |
|gene_source=MGI:3649529 | |gene_source=MGI:3649529 | ||
| − | |gene_symbol= | + | |gene_symbol=Prcd |
| − | |gene_synonyms= | + | |gene_synonyms=Gm11744 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3649529 | |hgnc_mgi_id=MGI:3649529 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001163318 | |nearest_refseq=NM_001163318 | ||
|nearest_unigene=Mm.390349 | |nearest_unigene=Mm.390349 | ||
| − | |num_trans= | + | |num_trans=100038570 |
|species=mouse | |species=mouse | ||
|start=116657106 | |start=116657106 | ||
|start_of_center_position=116657111 | |start_of_center_position=116657111 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000116318 | + | |transcript_name=ENSMUST00000116318.2 DQ390337 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100183.1 | |tss_id=mm_100183.1 | ||
Latest revision as of 10:32, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 116657111 |
|---|---|
| End of the center position in the TSS region: | 116657112 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000116318.2 DQ390337 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100038570 |
| All_trans: | MGI:3649529 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001163318 |
| Entrez ID: | 100038570 |
| Nearest Unigene: | Mm.390349 |
| Nearest Refseq: | NM_001163318 |
| Nearest Ensembl: | ENSMUSG00000075410 |
| Gene Name: | photoreceptor disc component |
| Gene Alias: | Gm11744 |
| Gene Description: | photoreceptor disc component |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
