Difference between revisions of "TSS:Mm 100184.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000116318.2:-16 ENSMUST00000156088.1:16 NM_001163318:-16 uc007mlx.2:-16 DQ390337:-16 |chr=chr11 |cpg_percent=0.03 |distance=-16 |distance_to_ts...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |OTTMUSG00000003947= |
| + | |all_trans=MGI:3649529 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=24 | |distance_to_tss=24 | ||
|end=116657140 | |end=116657140 | ||
| + | |end_of_center_position=116657132 | ||
|entrez_id=100038570 | |entrez_id=100038570 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=Gm11744 | + | |gene_alias=Gm11744 |
| − | |gene_description= | + | |gene_description=photoreceptor disc component |
|gene_id=100038570 | |gene_id=100038570 | ||
| − | |gene_name= | + | |gene_name=photoreceptor disc component |
|gene_source=MGI:3649529 | |gene_source=MGI:3649529 | ||
| − | |gene_symbol= | + | |gene_symbol=Prcd |
| − | |gene_synonyms= | + | |gene_synonyms=Gm11744 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3649529 | |hgnc_mgi_id=MGI:3649529 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_001163318 | |nearest_refseq=NM_001163318 | ||
|nearest_unigene=Mm.390349 | |nearest_unigene=Mm.390349 | ||
| − | |num_trans= | + | |num_trans=100038570 |
|species=mouse | |species=mouse | ||
|start=116657123 | |start=116657123 | ||
| + | |start_of_center_position=116657131 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000116318 | + | |transcript_name=ENSMUST00000116318.2 DQ390337 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100184.1 | |tss_id=mm_100184.1 | ||
Latest revision as of 10:32, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116657131 |
|---|---|
| End of the center position in the TSS region: | 116657132 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000116318.2 DQ390337 |
|---|---|
| Distance: | -16 |
| Num_trans: | 100038570 |
| All_trans: | MGI:3649529 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001163318 |
| Entrez ID: | 100038570 |
| Nearest Unigene: | Mm.390349 |
| Nearest Refseq: | NM_001163318 |
| Nearest Ensembl: | ENSMUSG00000075410 |
| Gene Name: | photoreceptor disc component |
| Gene Alias: | Gm11744 |
| Gene Description: | photoreceptor disc component |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
