Difference between revisions of "TSS:Mm 100186.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000139934.7:0 ENSMUST00000142834.7:0 ENSMUST00000106378.7:0 NR_027821:0 NR_027820:0 NR_027819:0 uc007mly.2:0 uc007mlz.2:0 uc011yhx.1:0 AK007675...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1913543 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=16 | |distance_to_tss=16 | ||
|end=116671694 | |end=116671694 | ||
| + | |end_of_center_position=116671677 | ||
|entrez_id=66293 | |entrez_id=66293 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias= | + | |gene_alias=1810032O08Rik |
| − | |gene_description= | + | |gene_description=small nucleolar RNA host gene 16 |
|gene_id=66293 | |gene_id=66293 | ||
| − | |gene_name= | + | |gene_name=small nucleolar RNA host gene 16 |
|gene_source=MGI:1913543 | |gene_source=MGI:1913543 | ||
| − | |gene_symbol= | + | |gene_symbol=Snhg16 |
| − | |gene_synonyms= | + | |gene_synonyms=1810032O08Rik |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:1913543 | |hgnc_mgi_id=MGI:1913543 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_025472 | |nearest_refseq=NM_025472 | ||
|nearest_unigene=Mm.432051 | |nearest_unigene=Mm.432051 | ||
| − | |num_trans= | + | |num_trans=66293 |
|species=mouse | |species=mouse | ||
|start=116671658 | |start=116671658 | ||
| + | |start_of_center_position=116671676 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000139934.7 ENSMUST00000142834.7 ENSMUST00000106378.7 | + | |transcript_name=ENSMUST00000139934.7 ENSMUST00000142834.7 ENSMUST00000239180.1 ENSMUST00000106378.7 ENSMUST00000239226.1 ENSMUST00000153405.2 ENSMUST00000239190.1 ENSMUST00000239281.1 AK007675 AK013681 AK037979 BC055707 AK088915 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100186.1 | |tss_id=mm_100186.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8C2B7 |
}} | }} | ||
Latest revision as of 10:32, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116671676 |
|---|---|
| End of the center position in the TSS region: | 116671677 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000139934.7 ENSMUST00000142834.7 ENSMUST00000239180.1 ENSMUST00000106378.7 ENSMUST00000239226.1 ENSMUST00000153405.2 ENSMUST00000239190.1 ENSMUST00000239281.1 AK007675 AK013681 AK037979 BC055707 AK088915 |
|---|---|
| Distance: | 0 |
| Num_trans: | 66293 |
| All_trans: | MGI:1913543 |
TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NR_027820 |
| Entrez ID: | 66293 |
| Nearest Unigene: | Mm.432051 |
| Nearest Refseq: | NM_025472 |
| Nearest Ensembl: | ENSMUSG00000020812 |
| Gene Name: | small nucleolar RNA host gene 16 |
| Gene Alias: | 1810032O08Rik |
| Gene Description: | small nucleolar RNA host gene 16 |
| Gene Type: | ncRNA |
| CpG%: | 0.09 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
