Difference between revisions of "TSS:Mm 100192.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AF118272:7 ENSMUST00000132056.7:-60 AF118273:-60 ENSMUST00000156293.7:-62 NR_003364:-62 uc007mmb.1:-62 uc007mmc.1:-62 AK158468:84 AK156340:96 ENSMUST000...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3039625 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=116752235 | |end=116752235 | ||
| + | |end_of_center_position=116752232 | ||
|entrez_id=193217 | |entrez_id=193217 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_003364 | |nearest_refseq=NR_003364 | ||
|nearest_unigene=Mm.100084 | |nearest_unigene=Mm.100084 | ||
| − | |num_trans= | + | |num_trans=193217 |
|species=mouse | |species=mouse | ||
|start=116752228 | |start=116752228 | ||
| + | |start_of_center_position=116752231 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AF118272 | |transcript_name=AF118272 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100192.1 | |tss_id=mm_100192.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:33, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116752231 |
|---|---|
| End of the center position in the TSS region: | 116752232 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF118272 |
|---|---|
| Distance: | 7 |
| Num_trans: | 193217 |
| All_trans: | MGI:3039625 |
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NR_003364 |
| Entrez ID: | 193217 |
| Nearest Unigene: | Mm.100084 |
| Nearest Refseq: | NR_003364 |
| Nearest Ensembl: | |
| Gene Name: | cDNA sequence BC018473 |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC018473 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
