Difference between revisions of "TSS:Mm 100216.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000136584.1:61 |chr=chr11 |cpg_percent=0.04 |distance=61 |distance_to_tss=47870 |end=116966735 |entrez_id=268510 |gc_percent=0.58209 |gene_alia...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |GnT-IX= |
| + | |all_trans=MGI:3606200 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=47870 | |distance_to_tss=47870 | ||
|end=116966735 | |end=116966735 | ||
| + | |end_of_center_position=116966734 | ||
|entrez_id=268510 | |entrez_id=268510 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=C330018B01 | + | |gene_alias=C330018B01{{!}}GnT-IX{{!}}mGnTVB |
| − | |gene_description= | + | |gene_description=mannoside acetylglucosaminyltransferase 5, isoenzyme B |
|gene_id=268510 | |gene_id=268510 | ||
| − | |gene_name= | + | |gene_name=mannoside acetylglucosaminyltransferase 5, isoenzyme B |
|gene_source=MGI:3606200 | |gene_source=MGI:3606200 | ||
|gene_symbol=Mgat5b | |gene_symbol=Mgat5b | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3606200 | |hgnc_mgi_id=MGI:3606200 | ||
| + | |mGnTVB= | ||
|nearest_ensembl=ENSMUSG00000043857 | |nearest_ensembl=ENSMUSG00000043857 | ||
|nearest_promoter_id=NM_172948 | |nearest_promoter_id=NM_172948 | ||
|nearest_refseq=NM_172948 | |nearest_refseq=NM_172948 | ||
|nearest_unigene=Mm.35141 | |nearest_unigene=Mm.35141 | ||
| − | |num_trans= | + | |num_trans=268510 |
|species=mouse | |species=mouse | ||
|start=116966731 | |start=116966731 | ||
| + | |start_of_center_position=116966733 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000136584.1 | |transcript_name=ENSMUST00000136584.1 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100216.1 | |tss_id=mm_100216.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=F7BPB5 | |uniprot_id=F7BPB5 | ||
}} | }} | ||
Latest revision as of 10:33, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 116966733 |
|---|---|
| End of the center position in the TSS region: | 116966734 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000136584.1 |
|---|---|
| Distance: | 61 |
| Num_trans: | 268510 |
| All_trans: | MGI:3606200 |
TATA-Box annotation
| Distance to TSS: | 47870 |
|---|---|
| Nearest PromoterID: | NM_172948 |
| Entrez ID: | 268510 |
| Nearest Unigene: | Mm.35141 |
| Nearest Refseq: | NM_172948 |
| Nearest Ensembl: | ENSMUSG00000043857 |
| Gene Name: | mannoside acetylglucosaminyltransferase 5, isoenzyme B |
| Gene Alias: | C330018B01|GnT-IX|mGnTVB |
| Gene Description: | mannoside acetylglucosaminyltransferase 5, isoenzyme B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
