Difference between revisions of "TSS:Mm 100227.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK213489:-34 |chr=chr11 |cpg_percent=0.03 |distance=-34 |distance_to_tss=28669 |end=117143865 |entrez_id=74136 |gc_percent=0.567164 |gene_alias=1200017E...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |2810012L19Rik= |
| + | |Naa-35= | ||
| + | |all_trans=MGI:1921386 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=-34 | |distance=-34 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7833 |
|end=117143865 | |end=117143865 | ||
| + | |end_of_center_position=117143841 | ||
|entrez_id=74136 | |entrez_id=74136 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=1200017E04Rik | + | |gene_alias=1200017E04Rik{{!}}2810012L19Rik{{!}}Naa-35 |
|gene_description=SEC14-like lipid binding 1 | |gene_description=SEC14-like lipid binding 1 | ||
|gene_id=74136 | |gene_id=74136 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=MGI:1921386 | |hgnc_mgi_id=MGI:1921386 | ||
|nearest_ensembl=ENSMUSG00000020823 | |nearest_ensembl=ENSMUSG00000020823 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363165 |
|nearest_refseq=NM_028777 | |nearest_refseq=NM_028777 | ||
|nearest_unigene=Mm.272312 | |nearest_unigene=Mm.272312 | ||
| − | |num_trans= | + | |num_trans=74136 |
|species=mouse | |species=mouse | ||
|start=117143816 | |start=117143816 | ||
| + | |start_of_center_position=117143840 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00) |
|transcript_name=AK213489 | |transcript_name=AK213489 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100227.1 | |tss_id=mm_100227.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:33, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117143840 |
|---|---|
| End of the center position in the TSS region: | 117143841 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK213489 |
|---|---|
| Distance: | -34 |
| Num_trans: | 74136 |
| All_trans: | MGI:1921386 |
TATA-Box annotation
| Distance to TSS: | 7833 |
|---|---|
| Nearest PromoterID: | NM_001363165 |
| Entrez ID: | 74136 |
| Nearest Unigene: | Mm.272312 |
| Nearest Refseq: | NM_028777 |
| Nearest Ensembl: | ENSMUSG00000020823 |
| Gene Name: | SEC14-like lipid binding 1 |
| Gene Alias: | 1200017E04Rik|2810012L19Rik|Naa-35 |
| Gene Description: | SEC14-like lipid binding 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00) |
