Difference between revisions of "TSS:Mm 100237.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Msf= |
| + | |PNUTL4= | ||
| + | |Sint1= | ||
| + | |all_trans=MGI:1858222 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=32631 | |distance_to_tss=32631 | ||
|end=117232329 | |end=117232329 | ||
| + | |end_of_center_position=117232292 | ||
|entrez_id=53860 | |entrez_id=53860 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=MSF1 | + | |gene_alias=MSF1{{!}}Msf{{!}}PNUTL4{{!}}Sint1 |
|gene_description=septin 9 | |gene_description=septin 9 | ||
|gene_id=53860 | |gene_id=53860 | ||
|gene_name=septin 9 | |gene_name=septin 9 | ||
|gene_source=MGI:1858222 | |gene_source=MGI:1858222 | ||
| − | |gene_symbol= | + | |gene_symbol=Septin9 |
| − | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sint1 | + | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sept9 Sint1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1858222 | |hgnc_mgi_id=MGI:1858222 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_017380 | |nearest_refseq=NM_017380 | ||
|nearest_unigene=Mm.38450 | |nearest_unigene=Mm.38450 | ||
| − | |num_trans= | + | |num_trans=53860 |
|species=mouse | |species=mouse | ||
|start=117232254 | |start=117232254 | ||
| + | |start_of_center_position=117232291 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-95(GGATATTAAAAG,-,0.00) |
|transcript_name=ENSMUST00000106354.8 | |transcript_name=ENSMUST00000106354.8 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 10:34, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117232291 |
|---|---|
| End of the center position in the TSS region: | 117232292 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000106354.8 |
|---|---|
| Distance: | 0 |
| Num_trans: | 53860 |
| All_trans: | MGI:1858222 |
TATA-Box annotation
| Distance to TSS: | 32631 |
|---|---|
| Nearest PromoterID: | NM_001113486 |
| Entrez ID: | 53860 |
| Nearest Unigene: | Mm.38450 |
| Nearest Refseq: | NM_017380 |
| Nearest Ensembl: | ENSMUSG00000059248 |
| Gene Name: | septin 9 |
| Gene Alias: | MSF1|Msf|PNUTL4|Sint1 |
| Gene Description: | septin 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -95(GGATATTAAAAG,-,0.00) |
