Difference between revisions of "TSS:Mm 100257.1"
From referenceTSS
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|PNUTL4= | |PNUTL4= | ||
|Sint1= | |Sint1= | ||
| − | |all_trans=NM_001113488 | + | |all_trans=NM_001113488:103 ENSMUST00000106349.1:135 AK170048:210 ENSMUST00000155331.7:218 AK164581:218 AK031757:228 ENSMUST00000100193.7:-475 AJ250723:-475 NM_017380:-480 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 12: | Line 12: | ||
|entrez_id=53860 | |entrez_id=53860 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=MSF1 | + | |gene_alias=MSF1{{!}}Msf{{!}}PNUTL4{{!}}Sint1 |
|gene_description=septin 9 | |gene_description=septin 9 | ||
|gene_id=53860 | |gene_id=53860 | ||
|gene_name=septin 9 | |gene_name=septin 9 | ||
|gene_source=MGI:1858222 | |gene_source=MGI:1858222 | ||
| − | |gene_symbol= | + | |gene_symbol=Septin9 |
| − | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sint1 | + | |gene_synonyms=MSF1 Msf PNUTL4 SL3-3_integration_site_1 Sept9 Sint1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1858222 | |hgnc_mgi_id=MGI:1858222 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_017380 | |nearest_refseq=NM_017380 | ||
|nearest_unigene=Mm.38450 | |nearest_unigene=Mm.38450 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=117332194 | |start=117332194 | ||
|start_of_center_position=117332202 | |start_of_center_position=117332202 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001113488 | + | |transcript_name=NM_001113488.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100257.1 | |tss_id=mm_100257.1 | ||
Latest revision as of 10:34, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 117332202 |
|---|---|
| End of the center position in the TSS region: | 117332203 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001113488.1 |
|---|---|
| Distance: | 103 |
| Num_trans: | 9 |
| All_trans: | NM_001113488:103 ENSMUST00000106349.1:135 AK170048:210 ENSMUST00000155331.7:218 AK164581:218 AK031757:228 ENSMUST00000100193.7:-475 AJ250723:-475 NM_017380:-480 |
TATA-Box annotation
| Distance to TSS: | -111 |
|---|---|
| Nearest PromoterID: | NM_001113488 |
| Entrez ID: | 53860 |
| Nearest Unigene: | Mm.38450 |
| Nearest Refseq: | NM_017380 |
| Nearest Ensembl: | ENSMUSG00000059248 |
| Gene Name: | septin 9 |
| Gene Alias: | MSF1|Msf|PNUTL4|Sint1 |
| Gene Description: | septin 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
