Difference between revisions of "TSS:Mm 100300.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_009689:3 NM_001012273 | + | |Api4= |
| + | |TIAP= | ||
| + | |all_trans=NM_009689:3 NM_001012273:3 ENSMUST00000081387.10:17 AB013819:17 AK018022:73 ENSMUST00000093906.4:85 BC004702:85 AK142768:88 AF077349:102 EU366955:117 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
|end=117849234 | |end=117849234 | ||
| + | |end_of_center_position=117849229 | ||
|entrez_id=11799 | |entrez_id=11799 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=AAC-11 | + | |gene_alias=AAC-11{{!}}Api4{{!}}TIAP{{!}}survivin40 |
|gene_description=baculoviral IAP repeat-containing 5 | |gene_description=baculoviral IAP repeat-containing 5 | ||
|gene_id=11799 | |gene_id=11799 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=MGI:1203517 | |hgnc_mgi_id=MGI:1203517 | ||
|nearest_ensembl=ENSMUSG00000017716 | |nearest_ensembl=ENSMUSG00000017716 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_009689 |
|nearest_refseq=NM_009689 | |nearest_refseq=NM_009689 | ||
|nearest_unigene=Mm.8552 | |nearest_unigene=Mm.8552 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=117849223 | |start=117849223 | ||
| + | |start_of_center_position=117849228 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_009689 NM_001012273 | + | |survivin40= |
| + | |transcript_name=NM_009689.2 NM_001012273.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100300.1 | |tss_id=mm_100300.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=O70201 | + | |uniprot_id=O70201 Q549P2 |
}} | }} | ||
Latest revision as of 10:35, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 117849228 |
|---|---|
| End of the center position in the TSS region: | 117849229 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_009689.2 NM_001012273.1 |
|---|---|
| Distance: | 3 |
| Num_trans: | 10 |
| All_trans: | NM_009689:3 NM_001012273:3 ENSMUST00000081387.10:17 AB013819:17 AK018022:73 ENSMUST00000093906.4:85 BC004702:85 AK142768:88 AF077349:102 EU366955:117 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_009689 |
| Entrez ID: | 11799 |
| Nearest Unigene: | Mm.8552 |
| Nearest Refseq: | NM_009689 |
| Nearest Ensembl: | ENSMUSG00000017716 |
| Gene Name: | baculoviral IAP repeat-containing 5 |
| Gene Alias: | AAC-11|Api4|TIAP|survivin40 |
| Gene Description: | baculoviral IAP repeat-containing 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
