Difference between revisions of "TSS:Mm 100375.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:2443893 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-9009 | |distance_to_tss=-9009 | ||
|end=119258960 | |end=119258960 | ||
| + | |end_of_center_position=119258954 | ||
|entrez_id=14387 | |entrez_id=14387 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=E430018M07Rik | |gene_alias=E430018M07Rik | ||
| − | |gene_description= | + | |gene_description=glucosidase, alpha, acid |
|gene_id=207607 | |gene_id=207607 | ||
|gene_name=coiled-coil domain containing 40 | |gene_name=coiled-coil domain containing 40 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:2443893 | |hgnc_mgi_id=MGI:2443893 | ||
|nearest_ensembl=ENSMUSG00000025579 | |nearest_ensembl=ENSMUSG00000025579 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_008064 |
|nearest_refseq=NM_008064 | |nearest_refseq=NM_008064 | ||
|nearest_unigene=Mm.4793 | |nearest_unigene=Mm.4793 | ||
| − | |num_trans= | + | |num_trans=207607 |
|species=mouse | |species=mouse | ||
|start=119258947 | |start=119258947 | ||
| + | |start_of_center_position=119258953 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000126652.1 AK077170 | |transcript_name=ENSMUST00000126652.1 AK077170 | ||
Latest revision as of 10:37, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119258953 |
|---|---|
| End of the center position in the TSS region: | 119258954 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000126652.1 AK077170 |
|---|---|
| Distance: | -21 |
| Num_trans: | 207607 |
| All_trans: | MGI:2443893 |
TATA-Box annotation
| Distance to TSS: | -9009 |
|---|---|
| Nearest PromoterID: | NM_008064 |
| Entrez ID: | 14387 |
| Nearest Unigene: | Mm.4793 |
| Nearest Refseq: | NM_008064 |
| Nearest Ensembl: | ENSMUSG00000025579 |
| Gene Name: | coiled-coil domain containing 40 |
| Gene Alias: | E430018M07Rik |
| Gene Description: | glucosidase, alpha, acid |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
