Difference between revisions of "TSS:Mm 100391.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001040005:114 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=487 |
| − | |distance_to_tss=- | + | |distance_to_tss=-119 |
|end=119389985 | |end=119389985 | ||
|end_of_center_position=119389980 | |end_of_center_position=119389980 | ||
| − | |entrez_id= | + | |entrez_id=672511 |
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias= | + | |gene_alias=6030403J01{{!}}D11Ertd759e{{!}}mysterin |
| − | |gene_description= | + | |gene_description=ring finger protein 213 |
| − | |gene_name= | + | |gene_id=672511 |
| − | |gene_type= | + | |gene_name=ring finger protein 213 |
| + | |gene_source=MGI:1289196 | ||
| + | |gene_symbol=Rnf213 | ||
| + | |gene_synonyms=D11Ertd759e | ||
| + | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=MGI:1289196 | ||
|mmu-mir-1932= | |mmu-mir-1932= | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000070327 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001040005 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_001040005 |
| − | |nearest_unigene= | + | |nearest_unigene=Mm.133342 |
| − | |num_trans= | + | |num_trans=1 |
|species=mouse | |species=mouse | ||
|start=119389974 | |start=119389974 | ||
|start_of_center_position=119389979 | |start_of_center_position=119389979 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_035453.1 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_100391.1 | |tss_id=mm_100391.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:37, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119389979 |
|---|---|
| End of the center position in the TSS region: | 119389980 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_035453.1 |
|---|---|
| Distance: | 487 |
| Num_trans: | 1 |
| All_trans: | NM_001040005:114 |
TATA-Box annotation
| Distance to TSS: | -119 |
|---|---|
| Nearest PromoterID: | NM_001040005 |
| Entrez ID: | 672511 |
| Nearest Unigene: | Mm.133342 |
| Nearest Refseq: | NM_001040005 |
| Nearest Ensembl: | ENSMUSG00000070327 |
| Gene Name: | ring finger protein 213 |
| Gene Alias: | 6030403J01|D11Ertd759e|mysterin |
| Gene Description: | ring finger protein 213 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
