Difference between revisions of "TSS:Mm 100441.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1289196 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-364 | |distance=-364 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4795 |
|end=119486478 | |end=119486478 | ||
| − | |entrez_id= | + | |end_of_center_position=119486441 |
| + | |entrez_id=78439 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
| − | |gene_alias= | + | |gene_alias=Gm44935 |
| − | |gene_description= | + | |gene_description=RIKEN cDNA A930037H05 gene |
|gene_id=672511 | |gene_id=672511 | ||
|gene_name=ring finger protein 213 | |gene_name=ring finger protein 213 | ||
| Line 15: | Line 16: | ||
|gene_symbol=Rnf213 | |gene_symbol=Rnf213 | ||
|gene_synonyms=D11Ertd759e | |gene_synonyms=D11Ertd759e | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:1289196 | |hgnc_mgi_id=MGI:1289196 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000109408 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_153849 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_153849 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.440446 |
| − | |num_trans= | + | |num_trans=672511 |
|species=mouse | |species=mouse | ||
|start=119486402 | |start=119486402 | ||
| + | |start_of_center_position=119486440 | ||
|strand=+ | |strand=+ | ||
|transcript_name=BC022698 | |transcript_name=BC022698 | ||
Latest revision as of 10:38, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119486440 |
|---|---|
| End of the center position in the TSS region: | 119486441 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC022698 |
|---|---|
| Distance: | -364 |
| Num_trans: | 672511 |
| All_trans: | MGI:1289196 |
TATA-Box annotation
| Distance to TSS: | 4795 |
|---|---|
| Nearest PromoterID: | NR_153849 |
| Entrez ID: | 78439 |
| Nearest Unigene: | Mm.440446 |
| Nearest Refseq: | NR_153849 |
| Nearest Ensembl: | ENSMUSG00000109408 |
| Gene Name: | ring finger protein 213 |
| Gene Alias: | Gm44935 |
| Gene Description: | RIKEN cDNA A930037H05 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
