Difference between revisions of "TSS:Mm 100469.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |R75030= |
| + | |all_trans=MGI:2137336 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
|end=119943099 | |end=119943099 | ||
| + | |end_of_center_position=119943091 | ||
|entrez_id=108100 | |entrez_id=108100 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=IRSp53 | + | |gene_alias=IRSp53{{!}}R75030 |
|gene_description=brain-specific angiogenesis inhibitor 1-associated protein 2 | |gene_description=brain-specific angiogenesis inhibitor 1-associated protein 2 | ||
|gene_id=108100 | |gene_id=108100 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=MGI:2137336 | |hgnc_mgi_id=MGI:2137336 | ||
|nearest_ensembl=ENSMUSG00000025372 | |nearest_ensembl=ENSMUSG00000025372 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001037755 |
|nearest_refseq=NM_130862 | |nearest_refseq=NM_130862 | ||
|nearest_unigene=Mm.197534 | |nearest_unigene=Mm.197534 | ||
| − | |num_trans= | + | |num_trans=108100 |
|species=mouse | |species=mouse | ||
|start=119943082 | |start=119943082 | ||
| + | |start_of_center_position=119943090 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GGCTATAAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AK160401 AK145924 AK049469 AK170190 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100469.1 | |tss_id=mm_100469.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TV50 Q3UKP6 Q8BKX1 | + | |uniprot_id=Q3TV50 Q3UKP6 Q8BKX1 |
}} | }} | ||
Latest revision as of 10:39, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 119943090 |
|---|---|
| End of the center position in the TSS region: | 119943091 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK160401 AK145924 AK049469 AK170190 |
|---|---|
| Distance: | 0 |
| Num_trans: | 108100 |
| All_trans: | MGI:2137336 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001037755 |
| Entrez ID: | 108100 |
| Nearest Unigene: | Mm.197534 |
| Nearest Refseq: | NM_130862 |
| Nearest Ensembl: | ENSMUSG00000025372 |
| Gene Name: | brain-specific angiogenesis inhibitor 1-associated protein 2 |
| Gene Alias: | IRSp53|R75030 |
| Gene Description: | brain-specific angiogenesis inhibitor 1-associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGCTATAAAAGC,-,0.00) |
