Difference between revisions of "TSS:Mm 10062.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|CaMKIgamma= | |CaMKIgamma= | ||
| − | |all_trans=NM_144817 | + | |all_trans=NM_144817:0 ENSMUST00000016323.10:-11 ENSMUST00000165718.3:16 BC021840:30 AF428262:31 ENSMUST00000169907.7:36 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 10: | Line 10: | ||
|entrez_id=215303 | |entrez_id=215303 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=CLICK-III | + | |gene_alias=CLICK-III{{!}}CaMKIgamma |
|gene_description=calcium/calmodulin-dependent protein kinase I gamma | |gene_description=calcium/calmodulin-dependent protein kinase I gamma | ||
|gene_id=215303 | |gene_id=215303 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_144817 | |nearest_refseq=NM_144817 | ||
|nearest_unigene=Mm.40329 | |nearest_unigene=Mm.40329 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=193370260 | |start=193370260 | ||
|start_of_center_position=193370273 | |start_of_center_position=193370273 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-69(TCCCCTTTAAGG,-,0.00),-68(CCCCTTTAAGGC,-,0.00),-67(CCCTTTAAGGCT,+,0.00),-66(CCTTTAAGGCTG,+,0.00) |
| − | |transcript_name=NM_144817 | + | |transcript_name=NM_144817.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10062.1 | |tss_id=mm_10062.1 | ||
Latest revision as of 10:42, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 193370273 |
|---|---|
| End of the center position in the TSS region: | 193370274 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_144817.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | NM_144817:0 ENSMUST00000016323.10:-11 ENSMUST00000165718.3:16 BC021840:30 AF428262:31 ENSMUST00000169907.7:36 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_144817 |
| Entrez ID: | 215303 |
| Nearest Unigene: | Mm.40329 |
| Nearest Refseq: | NM_144817 |
| Nearest Ensembl: | ENSMUSG00000016179 |
| Gene Name: | calcium/calmodulin-dependent protein kinase I gamma |
| Gene Alias: | CLICK-III|CaMKIgamma |
| Gene Description: | calcium/calmodulin-dependent protein kinase I gamma |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -69(TCCCCTTTAAGG,-,0.00),-68(CCCCTTTAAGGC,-,0.00),-67(CCCTTTAAGGCT,+,0.00),-66(CCTTTAAGGCTG,+,0.00) |
