Difference between revisions of "TSS:Mm 100680.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_001290473:-4 NR_110959:-4 NM_145355:-4 NM_001290472:-4 uc007hsv.2:-4 uc007hsw.2:-4 uc056yje.1:-4 uc056yjf.1:-4 AK075756:-4 |chr=chr11 |cpg_percent=0....") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1922078 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=11 | |distance_to_tss=11 | ||
|end=3452952 | |end=3452952 | ||
| + | |end_of_center_position=3452945 | ||
|entrez_id=193670 | |entrez_id=193670 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_145355 | |nearest_refseq=NM_145355 | ||
|nearest_unigene=Mm.136973 | |nearest_unigene=Mm.136973 | ||
| − | |num_trans= | + | |num_trans=193670 |
|species=mouse | |species=mouse | ||
|start=3452937 | |start=3452937 | ||
| + | |start_of_center_position=3452944 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=17(TACTATAAAAGG,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AK075756 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100680.1 | |tss_id=mm_100680.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q91YT2 | + | |uniprot_id=Q91YT2 |
}} | }} | ||
Latest revision as of 10:43, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3452944 |
|---|---|
| End of the center position in the TSS region: | 3452945 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK075756 |
|---|---|
| Distance: | -4 |
| Num_trans: | 193670 |
| All_trans: | MGI:1922078 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_001290472 |
| Entrez ID: | 193670 |
| Nearest Unigene: | Mm.136973 |
| Nearest Refseq: | NM_145355 |
| Nearest Ensembl: | ENSMUSG00000020448 |
| Gene Name: | ring finger protein 185 |
| Gene Alias: | - |
| Gene Description: | ring finger protein 185 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 17(TACTATAAAAGG,-,0.00) |
